barSeed - Barley Seed Development Database

Probe CUST_8942_PI390587928

Source Contig U35_4984

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8942_PI390587928	Hv_44K_v2	TTGCAGCTCGTGAAATGCGACCTCAAAATCATATATAGTTCAACAATCCGCCTGGTATTA	516	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.704	2.618	1.382	0.488	0.610	0.543
Raw	42.924	48.308	21.404	10.575	3.350	3.332

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68705.3	2058	2e-24	1729 - 1788	100	60 / 60	plus	ABC12675 ABC12676
MLOC	MLOC_68705.4	2057	2e-24	1728 - 1787	100	60 / 60	plus	ABC12675 ABC12676
MLOC	MLOC_68705.2	2082	2e-24	1947 - 2006	100	60 / 60	plus	ABC12675 ABC12676
JLOC1	JLOC1_45479.3	2082	8e-25	1734 - 1793	100	60 / 60	plus
JLOC1	JLOC1_45479.2	2096	8e-25	1748 - 1807	100	60 / 60	plus
JLOC1	JLOC1_45479.1	2107	2e-21	1831 - 1884	100	54 / 54	plus
Harvest35	U35_4984	579	3e-25	517 - 576	100	60 / 60	plus

Contig Sequence (579 bp)

>U35_4984 579 Hv_44K_v2
TGCTTCCTCACTTACCATTCCATCTCATCAGTCTTCCAAGACAACATACATAGCGGGCCG
GAGCACGACGACGGCGAGATCGCGGCGCTGTCGCCGTTCGGGCTGGCAACGTACAAGATG
CAAGGGGATTTGTGGAGGAGGCCAGGGTCATCGGACCCCAGGAGGCTGTCTGAGCTCCAT
TGGGCGGCGTCCTCCTGGCTGAAGCAAGTCGGCGCGCACCATCCTGACTTCACCTTCTTC
ACGACGTCCCACCGTCGATGACACGACAGCGACACCCTGTTGATTCCGCGTGTGTTTCGG
TTGGATTTTGCATGTGCACCGGAACACGTCAAGATATGACACCAAGAACTTCATGTAGGA
TTTGATAGAACAGCATGCACCGGAGTTTTCTTCTTTCTGAATTTGCAGGAAGATACAGTT
ACTTGTTGCATCGATCGGATTAGGTGTCAGATTGCATGCTCTGTTTTTCGTTCATCGACG
GGCATGATGTAGCTGCAACACACCATTTCCAAAGAATTGCAGCTCGTGAAATGCGACCTC
AAAATCATATATAGTTCAACAATCCGCCTGGTATTACCA

Homology of Contig U35_4984 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None