barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_8941_PI390587928Hv_44K_v2CCATTTTCAAAGAATTGCAGCTCGTGAAATGCGACCTCAAAATCATATATTGTTCAACAA604GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 3.1742.6581.3040.4020.7600.605
Raw 33.18645.74317.7847.8624.2543.111



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_68705.320583e-211715 - 17749758 / 60plus ABC12675 ABC12676
MLOCMLOC_68705.420573e-211714 - 17739758 / 60plus ABC12675 ABC12676
MLOCMLOC_68705.220823e-211933 - 19929758 / 60plus ABC12675 ABC12676
JLOC1JLOC1_45479.320822e-211720 - 17799758 / 60plus
JLOC1JLOC1_45479.220962e-211734 - 17939758 / 60plus
JLOC1JLOC1_45479.121072e-211817 - 18769758 / 60plus
Harvest21ABC126766793e-25605 - 66410060 / 60plusABC12676
Harvest21ABC126755776e-2216 - 759758 / 60minusABC12675
Harvest35U35_49856793e-25605 - 66410060 / 60plus
Harvest35U35_49845796e-22503 - 5629758 / 60plus



Contig Sequence (679 bp)

>U35_4985 679 Hv_44K_v2
CCTCATGTCGCTCAGCAGCGCCGAGCTCTCGCCGTCCAGTTGGATGTCCGTGGCATGGTA
CCCAATCTATCACATCCCTGCTCATGTCAACCTCAGGGTACCTCTGCCTGCTTCCTCACT
TACCATTCCATCTCATCGGTCTTCCAAGACAACATAGATAGCGGGCCGGAGCACGACGAC
GGCGAGATGGCGGCGCTATCGCCGTTCGGGCTGGCGACGTACAAGATGCAAGGGGATTTG
TGGAGGAGGCCAGGGTCATCGGACCCCAGGAGGCTGTCTGAGCTCCATTGGGCGGCGTCC
TCCTGGCTGAAGCAAGTCGGCGCGCACCATCCTGACTTCACCTTCTTCACGACGTCTCAC
CGTCGATGACACGACACCCTGTTGATTCCGCGTGTGTTTCGGTTAGATTTTGCATGTGCA
CCGGACAACGTCAAGATATGACACCAAGAACTTCATGTAGGATTTGATAGAACGGCATGC
ACCGGAGTTTTCTTCTTTCTGAATTTGCAGGAAGATACAGTTACTTGTTGCATCGATCGG
ATTAGGTGTCAGGTTGCATGCTCTGTTTTTCGTTCATCGACGGGCATGATGTAGCTGCGA
CACACCATTTTCAAAGAATTGCAGCTCGTGAAATGCGACCTCAAAATCATATATTGTTCA
ACAAAAAAAAAAAAAAAAA



Homology of Contig U35_4985 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None