barSeed - Barley Seed Development Database

Probe CUST_8934_PI390587928

Source Contig U35_4992

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8934_PI390587928	Hv_44K_v2	TTATTGTGCTAAGAGATCATGTTGAAGGGTTTGGATTTGGACTCCATATTTGCGAAAAAA	1239	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.288	1.490	1.222	0.832	0.375	0.475
Raw	138.280	241.455	174.563	177.052	29.132	41.101

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_4992	1309	3e-25	1240 - 1299	100	60 / 60	plus

Contig Sequence (1309 bp)

>U35_4992 1309 Hv_44K_v2
CAAGACTGGTTTCTGGTTTAGCAAAGTGTTCAACGCCTGACTCGAGCAGTAAGGACTTGG
TAGGACGTAGAATAAAAGTTTGGTGGCCTTTGGATAAGGAATTTTATCCAGGTGTTGTGA
AATCTTATGATTCAGCAAAGAAGCTTCATACAGTCTTATATGATGATGGAGATATTGAGC
AGCTTAACATGGCTAAAGAAAAGTGGAAAATGATTGAAAGTAATGGTTCACCAATGAAGC
AGCAAAAGAAGGATCATGTAGGTTCAAATCAAGAACGAGCACAGGAGACGAAATCTACCA
GCAGCATGGAAGTTCCAGCTAACCAACATAAGCCAATAAAGACATCACAGGAGACGAAAT
CTACCAGCAGCACGAAACTTCCAGCTAACCAACATAAGTCAATAAAGACGCCCTCACCTC
TAAAGAGGAAAGGAAAACCAAAAACGCCGCCGAAAAACAAACGTAGAAAGGCATCAGGAG
GTAGACGGTCCATTGGAGCTACCAGCGAAGCTGGTGTTATTGAGTCAGATTCAGCCAGTT
CTCTCGCTCATTCAGATTCCGACAAAGATGTAAAATCAGATGGCGACAAGGATAAAGAGG
TAGAGGTTGGCTCAGCTGAGAAAGAAAAGGCAGAAAAAACAGAGAACGAGTCTGCAGAAG
ATATGGAGTTGGAAGAGAAAAACCCTGATGGCGACAGTTTGAGCGGCAAGAAGGAATCTG
ATGACGAAACTCTTAGTGTCTGGAAAAAGCGTGCATCGCAAGCGACATAGGCTTTACTTA
CTCTCAGTTGACATATGTCGTCCTAGGATGCAGATATCAGAGGCAGTCGTCTGTGGAATG
TGGATATCTCATTAATTTGACCCTTGCAGCTGACAGTTGTGATGTAGAAAAATGTTCTTT
GCAATAGCAACAGGTTAGTTAGAAGAGCCAGCTGGATAGGAAGGATTTGCTTTGTAATGT
TATTTAGGTGCTAGAACTTGCTGCCGACTTCACCATGCCATTGTTTGATGGGCGTATGAA
TTCTTGAGGGTCAGATGTGTAACATATCTTGTCTACCATTCTTTTGCAGGATATATTGAC
CGTGTCTTTAAAACTCATGTAGAAATGTTGTACAACAATAAATCAGTGTCTTGGGATTGT
TTTGCCACTAGTGTGGTGGTCCTCTTTTTGCCCCCCTATTCGAAGAAACAGATTTTGAAT
ATGCGGTGAGAGGCACCGATTTTTTTGGATTCAGACTCCTTATTGTGCTAAGAGATCATG
TTGAAGGGTTTGGATTTGGACTCCATATTTGCGAAAAAAAAAAGAAAAA

Homology of Contig U35_4992 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None