- Probe CUST_8928_PI390587928
- Source Contig U35_4995
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_8928_PI390587928 | Hv_44K_v2 | TTCTTCCATGAAAATGGGGCAAGAAAACATGGACCTTTTGCTCAATCGGTCGTGGCTTGT | 542 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_64798.1 | 1846 | 2e-24 | 924 - 983 | 100 | 60 / 60 | minus | ABC11481 |
MLOC | MLOC_64798.3 | 1664 | 2e-24 | 742 - 801 | 100 | 60 / 60 | minus | ABC11481 |
MLOC | MLOC_64798.4 | 1512 | 2e-24 | 516 - 575 | 100 | 60 / 60 | minus | ABC11481 |
JLOC1 | JLOC1_42586.1 | 1536 | 8e-25 | 746 - 805 | 100 | 60 / 60 | plus | |
Harvest21 | ABC52152 | 604 | 3e-25 | 432 - 491 | 100 | 60 / 60 | plus | |
Harvest21 | ABC11482 | 622 | 3e-25 | 489 - 548 | 100 | 60 / 60 | plus | |
Harvest35 | U35_50122 | 604 | 3e-25 | 432 - 491 | 100 | 60 / 60 | plus | |
Harvest35 | U35_4995 | 676 | 3e-25 | 543 - 602 | 100 | 60 / 60 | plus |
Contig Sequence (676 bp)
>U35_4995 676 Hv_44K_v2 CGCGGTGGCGGCCTGCCTCAAAAAGAGGATCCCCCGGGCTGCTTTTCTCAACACAAGGCT GCCTCCCTCTGTGTCCCCCTAAGGTTCCCAACCAAGAAGGAGCGACGACGGCGACACGCG TAGGTGGACGGAACGGAACCGGTCGCTTGTTGTGCGGGGCATGGGGCTCCTCGACCAGCT CTGGGACGAGACGGTCGCCGGCCCGCGGCCGGACCACGGCCTCGGCAGGCTCCGCAGGTA TTCCTCCTTCTCGCCCTCGACCGCGGTGGCAGCGGATGTCGCGCCCAAGGTGACCCGCAG CATCACCATCGCCCGGCCGCCGTCTCTCTCGGTCCCGTCCGGCGAGTCAAGCTCCGTGCC GTCGTCTCCGGCCAGCGCGCCGGAGTCCCCGTTCGCAGCAGGTGGGCTGTCCTCCTCCTC TGTTTCTTGGCCTCTCCTTGTGATTCCAGTCTTTAGTTAGGATCGGTCTGTGGCTCTGTG TAGCTCAGAGCCGCTGATCGAAGCTCGTCGCTTTTATATATTGGATCCGCGATCTGTCGT CCTTCTTCCATGAAAATGGGGCAAGAAAACATGGACCTTTTGCTCAATCGGTCGTGGCTT GTCCCTCGATGCTCGAGTTTGATTTAGCTACAGAATCAGATCTGTGAGCAGAGCACTGTC GCAGACGCAGAGATGT
Homology of Contig U35_4995 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |