barSeed - Barley Seed Development Database

Probe CUST_8926_PI390587928

Source Contig U35_4996

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8926_PI390587928	Hv_44K_v2	TGAAGTTGCTCGTCGCATCTCCTGCATTGAGTGTGATGTCGAACTTGTATAACTTTTGAC	1124	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.043	1.514	1.070	1.075	0.567	0.582
Raw	1170.512	1375.421	831.206	1359.054	245.181	273.673

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_42628.1	1313	8e-25	1182 - 1241	100	60 / 60	plus
Harvest21	ABC11073	1214	3e-25	1125 - 1184	100	60 / 60	plus	ABC11073
Harvest35	U35_4996	1214	3e-25	1125 - 1184	100	60 / 60	plus

Contig Sequence (1214 bp)

>U35_4996 1214 Hv_44K_v2
CTAGTCCTTCTCCTCACCAGCTTAGATCAGAGGCGGCGGCGATGATGCTGAGGGCGCGGC
GAGCGGCGGGGCCGCTTCTCCGCCTCGCCGACGCAGGCGCCGTTGGCGAGAGGATCTGCG
GTGGCGCGCAGCCCGCACGCGCGGTGTTCGCCCGCGGGTTCCTGGATTTCTTGAAGCCGT
GGAGCAAGGAGAGCCCCGAGAATGCGGAGAAGAAGGCCAAGGCGAGGGCGAGGCTTACTG
ATGAGATGAGCAGGGGGTACTTCCAGGACATCTCCGAGATCCGTAAGAACAATGGCAAGA
TTGCGGCGGCGAATAAGATCATTATCCCAGAGGCCGCTGCCGTGAAGTTCCCTAATCTTG
CTTTGGAGTCCCCTGCTGGCAGAGCATTGCAGCTGCCGCTTGTTGCGTCTCCTCCGCTAG
GCGATAGTCATGGGGCTGATGGTACGGTGCCGGTGGTTCCTGTTGCGGCACTGGTGTGCC
TTTCGTTTCGTGCAAGCTCGCAGAAAATGGCAGAGTCGTGGAGTCTACCTTTTCTTGATG
CATTTGGTGCCACTAGAAAAGTTGAAGCATATGAGGTCTCGTTTATAGATTCGTGGCTGT
TATCATCAAGTCCCTTGAGGCGTGCCTTCCTCAAGGCGATGAGGAAATCGAACAATCCAC
AAAGACATGCTGTCTATGCCTTCGGAGATCACTATGACTTCAGGAAGGAGCTTCAAATTG
TAAACCTTCTTACCGGGTACATATACCTGGTTGATCGCCTGGGTAGGATAAGATGGCAGG
GCTTTGGAGCTGCGACGAAGGAAGAGTTGTCATCGCTAACAGCGTGTGCCTCCATCTTGT
TAGATGAGAAATGAAATTAAAAGGCTTCTTGAACATTGGCCATTTTAGGCTGGAGAAATT
TTGTTTCGTCGCTGTTTCAGCCGTTTCGGCCTTTCCCCCTCCCCCTTTCTTTCCTGCCCG
AGGGACAGTTTTTCTCTGACAGATACAACATACTATATGGATTGGGTTGTTTTCTGCAAT
CCAGTCACATAATAGTGTATTGATGTAACAGAGTGGATTCTCAGCATGGATTGGATGCAC
CAGAAATAATCGAATTGAAACACTAGCCTTCTTGGATCAAATAGTGAAGTTGCTCGTCGC
ATCTCCTGCATTGAGTGTGATGTCGAACTTGTATAACTTTTGACTATTAAAATATTTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_4996 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g08410.1	269	8e-83	protein\|ATP10 protein, expressed
Brachypodium v1_2	Bradi2g34160.1	440	1e-89
Arabidopsis v10	AT1G08220.1	274	7e-55	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitochondrial proton-transporting ATP synthase complex assembly; LOCATED IN: mitochondrial inner membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly factor ATP10, mitochondria (InterPro:IPR007849); Has 168 Blast hits to 168 proteins in 86 species: Archae - 6; Bacteria - 0; Metazoa - 2; Fungi - 107; Plants - 30; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). \| chr1:2581574-2583288 REVERSE LENGTH=274