barSeed - Barley Seed Development Database

Probe CUST_8912_PI390587928

Source Contig U35_1015

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8912_PI390587928	Hv_44K_v2	AAGAACCTTGATGTGATGAAAGCTGCTATTGACGGCTTGACGAACACAGAGGATGATGAC	794	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.187	1.120	1.181	0.837	0.316	0.330
Raw	15743.333	22516.333	21318.167	23519.370	3162.097	3616.157

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34004.1	1970	2e-24	574 - 633	100	60 / 60	minus	ABC03756 ABC03757 ABC03759
JLOC1	JLOC1_21957.1	1978	8e-25	1344 - 1403	100	60 / 60	plus
Harvest21	ABC03756	1893	3e-25	1279 - 1338	100	60 / 60	plus	ABC03756
Harvest35	U35_1015	1409	3e-25	795 - 854	100	60 / 60	plus

Contig Sequence (1409 bp)

>U35_1015 1409 Hv_44K_v2
GCTATAGCAGGGCCAAGGTGAAGTTCAATGTGAATCGTGTGGATAATATGGTGATTCAAG
CCATCTTTCTGTTGGATACACTTGATAAGGATGTTAATTCCTTCTCCATGAGAGTGAGGG
AGTGGTATGGATGGCATTTTCCTGAGCTGGTGAAGATTGTGAATGACAACTACCTCTATG
CTAAGCTTGCCAAGTTTGTGGTAAACAAATCTGACTTGTCAGAGAAGGACATTCCAGCTT
TAGCGGATCTAATTGGAGATGAAGACAAGGCAAAGGAAATTGTTGAGGCAGCAAAGGCAT
CTATGGGCCAGGATCTTTCACCTGTTGATTTGATCAATGTCCAACAGTTTGCTCAGAGGG
TCATGAATCTATCCGAGTACCGTAAAAATCTCTATGAATATCTGGTGACAAAGATGAATG
ATATTGCACCAAACCTGACATCATTGATTGGTGAAATGGTTGGAGCTCGGCTAATCTCTC
ATGCTGGCAGTCTTTCAAATCTTGCAAAATGCCCTGCCTCTACTCTGCAGATACTGGGTG
CTGAAAAGGCACTCTTTAGAGCTCTTAAAACACGTGGAAACACACCGAAGTATGGCCTCA
TATTCCACTCATCTTTTATTGGGCGTGCATCAACTAAGAACAAGGGAAGAATGGCTCGAT
ACCTGGCAAACAAATGTTCCATTGCTTCACGTATTGACTGCTATTCAGATATGAGCAGCT
CCATTTTTGGTGAGAAGCTGCGTGAACAGGTTGAGGAGAGACTAGACTTTTACGACAAGG
GTGTTGCACCCCGCAAGAACCTTGATGTGATGAAAGCTGCTATTGACGGCTTGACGAACA
CAGAGGATGATGACGGCAAAGAGAATGGTGATGCATCCGTGAAGAAAAGCAAAAAGAAGA
AGTCCAAAGCTGAGGCTAACGGTGACGCGATGGACGTTGACAGTGCTGCGGCTGAGGCTG
AAACGGGAACCGAGAAGAAGAAGAAGAAGAAGCACAAGCTTGAGGAGCCGCAGGACGAGG
AGATGCAAGCCAACGGCGACGACGAGACCCCCAAGAAGAAGAAAAAGAAGAACCGCGATG
CCGAGTCTGTTGACCCTAAGACTGGCACCGAGGGGAAATCCAAGAAAAAGAAGAAGAAAT
CCAAGACTGAGGCTGACGAGTAGTAGCTTAGTGCCTAATAGCGAGTGTTGAAGTTGATGG
ATCAAGGATCGATTTTTTTGTACCAACTGTTTAAGTGTGTACTCTGTGAGCCTCTTTTAG
CCCTTGATGAGTTCTGTAATGTAGCATGGCATGGACTGAAGCGGCGTATCTGTATTGCTT
TTGATGTTTGGGATAGCTTACCTTTCCTAGTTATAAATGGGATGGCATTGTTCGCACTGG
CAGTAGTTGAAGGNTCACATAGAAATACA

Homology of Contig U35_1015 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g22880.1	553	0.0	protein\|nucleolar protein 5A, putative, expressed
Brachypodium v1_2	Bradi1g32180.1	548	0.0
Arabidopsis v10	AT3G12860.1	499	4e-165	NOP56-like pre RNA processing ribonucleoprotein \| chr3:4091678-4093921 FORWARD LENGTH=499