barSeed - Barley Seed Development Database

Probe CUST_8911_PI390587928

Source Contig U35_1016

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8911_PI390587928	Hv_44K_v2	TCTGTTTTTCTATGCCCAGTAGCGTTGAAATTTGAACATCATTGGCTTCAACCTCTATTT	507	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10910.1	543	2e-24	217 - 276	100	60 / 60	plus	None
JLOC1	JLOC1_7178.1	356	8e-25	220 - 279	100	60 / 60	plus
Harvest21	ABC17210	462	3e-25	362 - 421	100	60 / 60	plus
Harvest35	U35_1016	608	3e-25	508 - 567	100	60 / 60	plus

Contig Sequence (608 bp)

>U35_1016 608 Hv_44K_v2
TGTCTGCCAAGAAAAGTAAGAAAAAGAAGTCGAAATCTGAGGCTGACGGTGACGCCATGG
ATCTTGATAAGCCTGCCAGCACGGCCGCAGGAGAAGAGACAGAGAACAAGAAAAAGAAAA
ATAAGCACAAGCTAGAGGAACCTGATGGCAAAGCAAGATATGGCAGAGCTTGGGTTCGGT
AATGCAGACGCCGTGGTTACGTCTTCTGAGAAGGACAGCAAACTGGAGAGTCCAGCGAGT
GATTCGGAAGAGAAGAAATAGCTGTTTAACATGCAAGCCAGCAAAAGGATACTAGAGCAT
AACCTGTTTAATTCGGCAAGTTCTACACTCGGGCTAGATTTAACGTGGAATACCTCGTAT
ATTCTTTTACTAGTTTCTCTGATAAATTAAGCCGTGTACCACAGGTGGAGAAAGTATCAG
TTTACATATGCTCTTTTTAATGCTTTCATAGGATTTTTTTTTGTCCTTTGGATCAGCTGG
ACGGTACTAAATTTTTTCTAAGAATTGTCTGTTTTTCTATGCCCAGTAGCGTTGAAATTT
GAACATCATTGGCTTCAACCTCTATTTTTTTTCGCCGGCCACATAGGCTGGGCTCTGTTT
TAAAAAAA

Homology of Contig U35_1016 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None