barSeed - Barley Seed Development Database

Probe CUST_8902_PI390587928

Source Contig U35_1025

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8902_PI390587928	Hv_44K_v2	CGGTTGATGGATGTTTTCATCTTATGTAGATTTTCTTTTTGCCTTGTACTGAACCTATGT	1427	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.349	0.480	1.037	1.409	1.167	1.201
Raw	7717.620	16771.073	32061.067	63656.800	19656.667	22132.667

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251315.1	1533	2e-24	1421 - 1480	100	60 / 60	plus	ABC03057
MLOC	MLOC_43496.1	1702	2e-24	1182 - 1241	100	60 / 60	minus	ABC03057
Harvest21	ABC38693	360	3e-25	53 - 112	100	60 / 60	minus
Harvest21	ABC29823	317	3e-25	203 - 262	100	60 / 60	plus
Harvest21	ABC03057	1521	3e-25	1411 - 1470	100	60 / 60	plus	ABC03057
Harvest35	U35_1025	1539	3e-25	1428 - 1487	100	60 / 60	plus

Contig Sequence (1539 bp)

>U35_1025 1539 Hv_44K_v2
ACCCCCACACTGCTAGTCTTGTAGCGAGCGACACACCCACAGGGAGCGGCACAGAGCCAC
CACCACCACCCAACGCCACCAGGAAGCAGGGCCGCGGGAGCGGGACAGAGGAGGGACGGA
CGCCATGGGCGAGGAGGAGAAGAAGCCCAAGGAGGAGGAGAAGCCCAAGGAGGAGGAGCC
GAAGAAGGAGGAGAAGCCCAAGGAGGGAGAGGAGGACAAGCCCAAGGACGACAAGCCCAA
GGAGGGGGAAGGGGAGGGGGAGAAGCCCAAGGAGGAGGAGGCGGCGCCCCCGCCGCCGCC
GCCGCCGCCGGAGGAGGTCGTGATGCGGGTCTACATGCACTGCGAGGGCTGCGCCAGGAA
GGTCAAGAAAATCCTCAAGAGATTCGATGGAGTAGAGGACGTCATTGCCGACTCTAAGGC
ACACAAGGTGGTTGTGAAAGGAAAGAAGGCGGCTGCCGACCCGATGAAGGTGGTCGAGCG
TGTTCAGAAGAAGACAGGCCGCAAGGTGGAGCTCCTCTCGCCGTTACCGCCGCCGCCGGA
GGAGAAAAAGGAAGAGGAGAAGAAGGAGGAGCCTGAGCCGCCGAAACCTGAAGAGAAGAA
GGAGCCACCGGTGATCTCTGTGGTGCTGAAGGTGCACATGCACTGCGAGGCCTGCGCGCA
GGTCATAAAGAAGAGGATCGAAAAGATGAAAGGAGTGCAATCTGCAGAGCCAGACCTGAA
GGCCTCGGAAGTGACGGTGAAGGGCGTGTTTGAGGAGACCAAGCTGGCTGAGTACGTGCA
CAAGCGCACCGGCAAGCATGCAGCCATTATCAAGTCCGAGCCGGCTGCCCCGGCCGAGAA
AGCCGGAGACGGCGAAGCCAAGGATGAAAAGAAGGCAGCGGAAGGCGGCGAGGAGAAGAA
GGACGACAAGGAGGAGAAGAAGGATGACAAGGATGGCGCATCAGATGAGAAGAAAGAGGA
GAAAGACAAGGAGGATGCCAGCGCCGGCGGCGAGGAGAAGGAGAAGGAGAAAGACCCCGG
CGCCATCGCAGCAGCCAACCTCTACATGCACTACCCTCAGTTTGCGTTCCCGGGAGGGTA
CTACCCGCCGAGGCCGGGATACGCCGCCTACCCTCCGCCGCCGGCCTACCCACCCTACCC
GCCGCAGATCTTCAGCGACGAGAACCCAAACGCCTGCTCCGTCATGTAAAAAGGAGGTTA
GAACCTTGGTGGTCTAGAGTGGAAAACAAATAAGAAGGGGAGAAGGGACTGCATGAGTTG
AGGGGTGCCATGGCAGCAAAATGCCCTTGACCAAAGCAAATGGCCAGGGCAGCAGCTTGA
AGAAAGTACCAGGCTTTTTTGTGGTCAGTTTTTCTTTTTTTGAACCTTTTATGTTTTTAA
TTAATCCTTTTCACCGTCTGGTATAAAGTAAGTCTGGACTTCCTTGTCGGTTGATGGATG
TTTTCATCTTATGTAGATTTTCTTTTTGCCTTGTACTGAACCTATGTAAAAACTTGTTAT
TATAGTATAGTAATTCTCTCCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1025 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g32030.1	386	5e-67	protein\|heavy metal-associated domain containing protein, expressed
Brachypodium v1_2	Bradi5g08240.1	364	4e-67
Arabidopsis v10	None