barSeed - Barley Seed Development Database

Probe CUST_8898_PI390587928

Source Contig U35_1029

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8898_PI390587928	Hv_44K_v2	ATATCCTGTCACATCCAGCACGCAAACATTCATTAGTTAGGATCTTTCAGGCAATCCCCG	717	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355331	635	2e-24	421 - 480	100	60 / 60	plus	ABC03221 ABC29962 ABC43416 ABC43841
JLOC1	JLOC1_4224.1	709	8e-25	443 - 502	100	60 / 60	plus
Harvest21	ABC03221	827	3e-25	718 - 777	100	60 / 60	plus	ABC03221
Harvest35	U35_1029	827	3e-25	718 - 777	100	60 / 60	plus

Contig Sequence (827 bp)

>U35_1029 827 Hv_44K_v2
CCCCAGTTTCCCTCCACACATCCTCCACGATCAAAAACAAAACCATCACCCCCCATCCCC
CGAGGCCACCACACACGCGCGCGCACACACCAGATTATTCCAAGAAGACCTCGGGAGGAT
CATGGCCGGCGTGAACACCAGCGTTGTCGGCCTCAAGCCCGCCGCGGCGGTGCCGCAGTC
GGCCTCGCCCGCGGCGGCAAAGCGCGTGCAGGTCGCCCCGGCCAAGGACCGGCGGTCGGC
GCTTCTCGGCCTGGCGGCCGTCTTCGCCGCCACCGCCGCCTCCGCCGGCTCCGCCAGGGC
AAGCGTCTTCGACGAGTACCTCGAGAAGAGCAAGCTCAACAAGGAGCTGAACGACAAGAA
GAGGGCGGCGACGAGCGGCGCCAACTTCGCGCGCGCCTACACCGTCCAGTTCGGCAGCTG
CAAGTTCCCCTACAACTTCACCGGCTGCCAGGACCTCGCCAAGCAGAAGAAAGTCCCGTT
CATCACCGACGACCTCGAGATCGAGTGCGAGGGGAAGGAGAAGTTCAAGTGCGGGTCCAA
CGTCTTCTGGAAATGGTGAAGCTGGTCGATATGGCGAGTGCTGATGTATGTCAGTCAGGC
TGTACCTAGATGTCCAAACTGCACAAGTGTTTCGGCTGTGAAGTCATCGTCTCTGTAATT
TTATCATCAAGTGGAATCCTGTTTTTCACCTGTAAAAAAAAAAAAAAAAACCTGCATATA
TCCTGTCACATCCAGCACGCAAACATTCATTAGTTAGGATCTTTCAGGCAATCCCCGCAA
AAAAAAAAAAATAAAAAATCTTTCAGTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1029 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g08770.1	150	1e-54	protein\|photosystem I reaction center subunit N, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g40780.1	143	1e-60
Arabidopsis v10	None