barSeed - Barley Seed Development Database

Probe CUST_8892_PI390587928

Source Contig U35_31967

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8892_PI390587928	Hv_44K_v2	TAACAACAGCAACACCAACACCAAGCCCCAGAAGAAATCGACGGAGATTGCCGTCGCCAC	135	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359207	2032	7e-23	988 - 1047	98	59 / 60	plus	None
MLOC	MLOC_77108.1	1482	7e-23	1074 - 1133	98	59 / 60	minus	None
JLOC1	JLOC1_51430.1	1521	4e-23	351 - 410	98	59 / 60	plus
Harvest35	U35_31967	334	3e-25	136 - 195	100	60 / 60	plus

Contig Sequence (334 bp)

>U35_31967 334 Hv_44K_v2
CAATGAGAATGCTGGAGGGGGACAGAAGACGGCGGCGCAAACGCCGGCGCTGAGCCGGAG
CTCGTCAAGGAAGGCCGAGCAGTCGCCGCTCCGGCGCAGTCCCATGGCCGAGATCGACGA
GAACTCCCTCCGAAATAACAACAGCAACACCAACACCAAGCCCCAGAAGAAATCGACGGA
GATTGCCGTCGCCACCCCGACCCGGAAGACCACGGAGCGCGCAAAGGAGCAGAATTCTCA
GAAGGAGAAGGCGGAGGAGACCATCGTTACGGCGTCGGAGACGAGAGCACCGTCGTCCAA
GACCACCGAGACGCGCACGGTCGAGACCCCCGGC

Homology of Contig U35_31967 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None