barSeed - Barley Seed Development Database

Probe CUST_8891_PI390587928

Source Contig U35_17674

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8891_PI390587928	Hv_44K_v2	ATGTTGTGAAGCCTGTTTTCGCTGGCCATGACGAACACGTAAAGTTATTGCTCCAAAAAA	1555	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.921	1.995	1.160	0.713	0.299	0.316
Raw	5864.677	9327.273	4846.557	4648.047	689.759	787.675

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55791.2	5194	3e-21	5002 - 5055	100	54 / 54	plus	ABC09287
MLOC	MLOC_55791.3	5191	3e-21	4999 - 5052	100	54 / 54	plus	ABC09287
JLOC1	JLOC1_36027.2	5095	2e-21	5027 - 5080	100	54 / 54	plus
JLOC1	JLOC1_36027.1	5098	2e-21	5030 - 5083	100	54 / 54	plus
Harvest21	ABC09287	1560	3e-25	1490 - 1549	100	60 / 60	plus	ABC09287
Harvest35	U35_17674	1626	3e-25	1556 - 1615	100	60 / 60	plus

Contig Sequence (1626 bp)

>U35_17674 1626 Hv_44K_v2
GGGCTGGCCTTAAAAATGCTGCTGGAGAATACAACTGTTTCCTGAATGTGATTATCCAGT
CATTATGGCATTTGAAGCGGTTTCGACACGAGTTCCTTAAAACATCATCACTGCATAAGC
ATATTGAAGATCCTTGTGCTGTCTGTGCATTATATAATATATTCGTTGACTTGAGCAAAG
CATCTGAGGGGCAAGGAGAAGCTGTTGCACCTACTTCTTTGAGGATAGCTTTGAGCAAAT
CCTATCCTAACAACAGGTTCTTTCAGGAGGGACAAATGAATGATGCATCTGAGGTATTGG
GTGTGATCTTTGAGTGCTTGCATAAGTCGTACACTTCTCGGGCTGAGTGCCATGCTAAAT
CTCACGAGGGCAATTCTATCGGCTCATGGGACTGTGCAAGCGATTTTTGCATTGCACATT
GTCTTTTTGGAATGGATGTCTATGAACGGATGAACTGCCACAATTGCGGATTAGAGTCTA
GACGACTTAAGTATACCTCATTCTTCCACAATATCAATGCTAGTTCACTTCGAACTGCAA
AGATGATGTGCCTAGATCCATTTGATGATCTTTTGAAGACTGTGATAATGAATGATCAGC
TAGCTTGTGATCCTGACGTTGGCGGTTGCGGAAAACCGAATCATATACACCACATTCTTT
CTAGTTCCCCTCATGTTTTTACAGTTGTTTTGGGATGGCAGAACAGCAAAGAGAGTGTTG
ATGACATAGCTGCAACCTTGGCTGGTATTTCGACTGAGATAGACATCAGTGTTTTCTACC
GTGGTCTAGATCGAGGAAGCAAACATTTTCTTGTGTCAGTGGTTTGTTACTATGGGCAGC
ATTATCATTGCTTTGCTTTCGAGGATGAGCACTGGGTCATGTATGATGACCAGACTGTTA
AGGTTATTGGTAGCTGGGATGATGTGGTCATTATGTGTGAGAAAGGTCATTTACAACCTC
AAGTGCTCTTCTTTGAAGCTGCAAATTAATTTTCTTCAAAGTTCAAGGGTGCTGTGCTGT
GCTGTGCTGTGCCGTGGTGTGGTTAACATGTCTTCCGAGATATAGGTTTTCCCGGTGACT
GAGAAGGTTAGCGATAGAATACAAAATTCGTTTTGAGCTATGGGGGATAATGGTGGTAAT
TTCAGCAGTTGCACTTGCCTGTCGGTTTTGTCGAGCCCTGCCTTAAATAAATGGTCGTCC
GAGCCTTTACTAAAAGGAGAGAAGTGGTGATATATATATTTTCCTTTTGGACTTTGGATA
TAGCCTGACCCCATATCCTGTCGAATGCGATTTTGCCGTGGAGGACTGTAGCGGGGATAA
CTCTACTCGATCATGTGCTGCCCCAGAGAAATTATTCATGAGTGCTGCTGAATTTGCTAG
AAGCTTATCAATATATACGGTTTTTTTGTGCTTACGATGTGGAGGAATGTTGTACTGTGT
GTGACGAAGGGCGGGGGGTATCAAAGAAAATGGATGCTGTCATTTTTCTTTTTGTTGCAA
ATTCCTGGGAGGGGGTTTCTTATCATCTGTAGTGACAAAGTTGTATTATCTCAGAATGTT
GTGAAGCCTGTTTTCGCTGGCCATGACGAACACGTAAAGTTATTGCTCCAAAAAAAAAAA
AAAAGG

Homology of Contig U35_17674 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g06950.1	1580	3e-173	protein\|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
Brachypodium v1_2	Bradi1g74000.3	1555	0.0
Arabidopsis v10	AT3G47910.2	1607	3e-144	Ubiquitin carboxyl-terminal hydrolase-related protein \| chr3:17674737-17681444 REVERSE LENGTH=1607