barSeed - Barley Seed Development Database

Probe CUST_8889_PI390587928

Source Contig U35_31969

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8889_PI390587928	Hv_44K_v2	ATGGCGTGTGGTACCCAACGGTGGTCAGCATCGGTCCAGTGCTCGACAACTCGCTGCAGT	22	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73427.3	1522	2e-24	50 - 109	100	60 / 60	plus	None
MLOC	MLOC_73427.1	2145	2e-24	823 - 882	100	60 / 60	plus	None
MLOC	MLOC_73427.2	2238	2e-24	823 - 882	100	60 / 60	plus	None
JLOC1	JLOC1_48885.1	2261	8e-25	848 - 907	100	60 / 60	plus
Harvest35	U35_31969	411	3e-25	23 - 82	100	60 / 60	plus

Contig Sequence (411 bp)

>U35_31969 411 Hv_44K_v2
GGGGTGTCATGTGACCTCTTCAATGGCGTGTGGTACCCAACGGTGGTCAGCATCGGTCCA
GTGCTCGACAACTCGCTGCAGTGCGCCCCGGACGCCAGGTTCAGCCCCCAGCTCTTCGAC
CTCCGGCGCCTCAAGAGCCTCACCTTCTACGCCTGCTTCCCGGCGGCCAACCCCACGGCG
ATCCCGGCGACTAGCTGGGACAGGCTCGCCGGCACCCTCGAGACGCTCGAGTTCCGCTCC
AACCCTGGCCTGGCCGGAGCTATCCCGGCTTCCATCGGTCGCCTGGCCAGCTTGCAGTCC
CTGGTCCTCGTCGACAACAACCTCACCGGTGCCGTGCCGCCGGAGCTCGGTGGGCTGGCA
AGCTGCGGCGGCTCGTGCTGTCCGGCACGGGCTGTCGGNCCCGGTCCCGCG

Homology of Contig U35_31969 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g02060.2	451	1e-62	protein\|TOO MANY MOUTHS precursor, putative, expressed
Brachypodium v1_2	Bradi2g00920.1	508	2e-60
Arabidopsis v10	None