barSeed - Barley Seed Development Database

Probe CUST_8880_PI390587928

Source Contig U35_29651

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8880_PI390587928	Hv_44K_v2	TCTAGCTCTGGTGTGTGAACCAGGTGAAGAAGAATCAACAAGAGTTTGGAGAGGGAAAAG	65	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70937.4	1011	2e-24	222 - 281	100	60 / 60	plus	ABC33113
MLOC	MLOC_70937.3	902	2e-24	225 - 284	100	60 / 60	plus	ABC33113
MLOC	MLOC_70937.5	1237	2e-24	193 - 252	100	60 / 60	plus	ABC33113
MLOC	MLOC_70937.2	1332	2e-24	331 - 390	100	60 / 60	plus	ABC33113
JLOC1	JLOC1_47103.4	1188	8e-25	148 - 207	100	60 / 60	plus
JLOC1	JLOC1_47103.3	1256	8e-25	216 - 275	100	60 / 60	plus
Harvest21	ABC29035	412	3e-25	66 - 125	100	60 / 60	plus
Harvest35	U35_29651	412	3e-25	66 - 125	100	60 / 60	plus

Contig Sequence (412 bp)

>U35_29651 412 Hv_44K_v2
TCCTCCCACCTTTTCCCATCTTAATTGCAAAGGTTTCCGCGGGATAACATTTGTTTTGGA
CTCTATCTAGCTCTGGTGTGTGAACCAGGTGAAGAAGAATCAACAAGAGTTTGGAGAGGG
AAAAGGGGATGGAAGGCGAGAGCTTCTCGGGGATGGGCAATGGAGGCGGCGGCGGCGGCG
GCGGAGGGGGGCACCACCAGGTGGTGGACGGGAAGCTGATCCAGACGTTCCACAAGAGCT
TCGTGCAGGTGCAGAGCATCCTGGACCAGAACCGGATGCTCATCTCCGAGATCAACCAGA
ATCACGAGTCCCGGGCGCCGGACAGCCTCACCCGCAACGTCGGCCTGATCCGGGAGCTCA
ACAACAACATACGCCGCGTCGTCCGCCTCTACGCCGACCTCTCCGCCTCTTT

Homology of Contig U35_29651 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None