- Probe CUST_8878_PI390587928
- Source Contig U35_43946
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8878_PI390587928 | Hv_44K_v2 | TGCATCAGTGGGATCAAAGATCTTCTCCACCTTTGTCACCTTCTTGAAGAGCACCTAAAG | 345 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.150 | 0.211 | 0.857 | 1.913 | 1.451 | 1.600 |
| Raw | 258.448 | 576.834 | 2044.717 | 7204.163 | 1907.913 | 2306.247 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_10158.2 | 1194 | 6e-21 | 381 - 433 | 100 | 53 / 53 | plus | |
| JLOC1 | JLOC1_10158.1 | 598 | 6e-21 | 142 - 194 | 100 | 53 / 53 | plus | |
| Harvest21 | ABC41265 | 548 | 3e-25 | 346 - 405 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC41138 | 437 | 3e-25 | 346 - 405 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28247 | 627 | 2e-21 | 349 - 401 | 100 | 53 / 53 | plus | |
| Harvest21 | ABC02818 | 1028 | 2e-21 | 362 - 414 | 100 | 53 / 53 | plus | |
| Harvest21 | ABC02817 | 1111 | 2e-21 | 458 - 510 | 100 | 53 / 53 | plus | |
| Harvest21 | ABC02816 | 534 | 2e-21 | 356 - 408 | 100 | 53 / 53 | plus | |
| Harvest35 | U35_43946 | 548 | 3e-25 | 346 - 405 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_861 | 1085 | 2e-21 | 396 - 448 | 100 | 53 / 53 | plus | |
| Harvest35 | U35_860 | 1115 | 2e-21 | 458 - 510 | 100 | 53 / 53 | plus |
Contig Sequence (548 bp)
>U35_43946 548 Hv_44K_v2 CTCCGCCTCCCTACTGCTGCTAGTAGCGCTAACCGGACTTCCCTCCGCCGCCAACGCCAA CATGACCGAGGTCTGCGTCAAGGCCGCCGTCGGCCACCCCGACACGCTCGGCGACTGCCC CTTCTCGCAGAGGGTGCTGCTCACGCTGGAGGAGAAGAAGGTGCCCTACGAGATGAAGCT CATCGACGTCAGCAACAAGCCCGACTGGTTCCTGAAGATCAATCCAGAGGGCAAGGTGCC TGTGTTTAACGGTGGTGATGGCAAATGGATTGCTGATTCTGATGTGATCACTCAAGTCAT TGAGGAGAAGTACCCGACTCCATCACTTGTGACCCCTCCTGAGTATGCATCAGTGGGATC AAAGATCTTCTCCACCTTTGTCACCTTCTTGAAGAGCACCTAAAGGCCCATGGACCCTAC ATCAACGGGGCGAACGTCTCCGCCGCGGATCTCAGCTTGGCTCCGAAGCTCTTCCACCTC CAGGTTGCCCTGGAGCACTTCAAAGGCTGGAAGGTCCCTGAAACACTGACCAGCGTCCAT GCTTACAC
Homology of Contig U35_43946 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g02530.1 | 298 | 3e-79 | protein|glutathione S-transferase, N-terminal domain containing protein, expressed |
| Brachypodium v1_2 | Bradi2g37480.1 | 214 | 1e-80 | |
| Arabidopsis v10 | AT1G75270.1 | 213 | 1e-56 | | Symbols: DHAR2 | dehydroascorbate reductase 2 | chr1:28250255-28251237 REVERSE LENGTH=213 |