barSeed - Barley Seed Development Database

Probe CUST_8875_PI390587928

Source Contig U35_29654

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8875_PI390587928	Hv_44K_v2	CAGCAAAATTAATACTGTACTACACCACAAAAGACTTTTATTTGCATGCATGCCTGTTTG	286	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.119	0.573	1.936	1.866	1.099	0.715
Raw	3.569	39.631	113.780	171.174	34.870	25.881

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71244.1	1279	2e-24	77 - 136	100	60 / 60	minus	ABC29040
MLOC	MLOC_71244.2	2136	2e-24	70 - 129	100	60 / 60	minus	ABC29040
MLOC	MLOC_71244.3	1862	2e-24	67 - 126	100	60 / 60	minus	ABC29040
MLOC	MLOC_71244.4	1879	2e-24	51 - 110	100	60 / 60	minus	ABC29040
JLOC1	JLOC1_47331.1	1985	8e-25	1572 - 1631	100	60 / 60	plus
Harvest21	ABC29040	393	3e-25	287 - 346	100	60 / 60	plus	ABC29040
Harvest35	U35_29654	393	3e-25	287 - 346	100	60 / 60	plus

Contig Sequence (393 bp)

>U35_29654 393 Hv_44K_v2
GGGGTCGCACACGCCCACGCAGATGGGCAGCGGCCGGTTCCCGGGGGAAGGGTACGGCCG
CGCGGCATATTTCCGCAACTTGCAGGTCGTGGACTGGGACAACAACCTCATCCCGGCGGC
AGGGCTCCGGCTCCTCGCCGACCACCCGGGGTGCTACGACATCGCCGGCGGCCAGGGCGG
CGCGTGGGGCAGCTACTTTTACTACGGCGGTCCAGGCAGGAACGTCCGGTGCCCCTAGGA
CTAGGACGGAACCAATACTGCTTACTCACGCCACAGATGCTAATTCCAGCAAAATTAATA
CTGTACTACACCACAAAAGACTTTTATTTGCATGCATGCCTGTTTGTTTTCTTTAACATA
AAAAAGCATTCACATTGACCCAAAAAAAAAAAA

Homology of Contig U35_29654 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g34360.1	561	3e-51
Arabidopsis v10	None