barSeed - Barley Seed Development Database

Probe CUST_8868_PI390587928

Source Contig U35_31971

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8868_PI390587928	Hv_44K_v2	AGGGCAACGTTAGTTCCGATGCTACCATGAGCACCAAGGACTATCTGGACCCTCCTCCGA	66	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17384.1	1669	7e-23	1242 - 1301	98	59 / 60	minus	ABC01216
JLOC1	JLOC1_12006.1	1560	4e-23	1210 - 1269	98	59 / 60	minus
Harvest35	U35_31971	269	3e-25	67 - 126	100	60 / 60	plus

Contig Sequence (269 bp)

>U35_31971 269 Hv_44K_v2
TCGAGCACTGTTGGCCTACCAATCGACATTCAGATATGGCCGCTGGAGAGGGCAAGCTGA
ATACGGAGGGCAACGTTAGTTCCGATGCTACCATGAGCACCAAGGACTATCTGGACCCTC
CTCCGACGCCGCTGCTGGACGCCGGCGAGCTAGGCAAGTGGTCTTTGTACCGGGCCACCA
TTGCCGAGTTCACCGCCACCCTCCTCTTCGTCTACGTCGCCGTGGCCACCGTAATCGGCC
ACAAGCGCCAAACCGACGCCCAAGCGTGC

Homology of Contig U35_31971 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None