barSeed - Barley Seed Development Database

Probe CUST_8865_PI390587928

Source Contig U35_31975

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8865_PI390587928	Hv_44K_v2	AAACACTCTCCTTGGCCGCCGACCGCTCGATCATCGGCGAATCACCACGTACGGAGCCAT	26	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38148.2	1794	2e-24	1684 - 1743	100	60 / 60	minus	ABC38185
MLOC	MLOC_38148.3	1799	2e-24	1689 - 1748	100	60 / 60	minus	ABC38185
Harvest35	U35_31975	275	3e-25	27 - 86	100	60 / 60	plus

Contig Sequence (275 bp)

>U35_31975 275 Hv_44K_v2
GCCGGCAACAACAACCAAAACACAACAAACACTCTCCTTGGCCGCCGACCGCTCGATCAT
CGGCGAATCACCACGTACGGAGCCATGGGAGGCGAGTCAGGTCACCAGGAGCCGTCGCCG
GCGAGCGCACGGCCACACGTGCTGCTCCTGTGCAGCCCGTGCATGGGGCACCTCATCCCT
TTCGCCGAGCTGGCGCGCCGGCTCGTCGCGGACCACGGCCTGGCCGCCACGATCCTCTTC
GCCGCGGCCATGGATGCTCCCTCCGAGCACTACGC

Homology of Contig U35_31975 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None