barSeed - Barley Seed Development Database

Probe CUST_8857_PI390587928

Source Contig U35_17686

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8857_PI390587928	Hv_44K_v2	GCCCAGTAATGGTCATGATCAAGTATGCTATTTTGGATATAGTAAATCGTAAGAATTCAG	2446	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.502	1.801	1.190	0.774	0.310	0.455
Raw	738.710	1366.483	792.818	812.760	114.051	181.925

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_17686	2509	3e-25	2447 - 2506	100	60 / 60	plus

Contig Sequence (2509 bp)

>U35_17686 2509 Hv_44K_v2
GTGACGATGACATGGCCATGGATGTTGATGTTAAAGATGAGCTTGATATTGATTTGCAAA
AACAAATAATGGCAGCATTTGATTCAAATACAAAGTTACTTGAACATTTGGTGAATGCTC
TGTTCACAGGCACCTTAAGCACAAACTATTCTGATCCATCTGGGCCATCAGATGCTGAAG
TGGAAGCTGTAGGGTCTATTTGTGCTTTTCTTCATGTCATGTTCAGCACATTGCCTCTGG
ATGTAACTATGACTGCACTGGCCTATCGCACTGACATTGTTCCTGCACTATGGAACTTTA
TAAAGCGATGCCACGAAAACCAAAGATGGCCATATTTTTCCAAGTATATCTCTCCTTTGC
CTGTAGATGCTCCTGGTTGGCTCCTGCCTGTGTCTGTATTCTGTCCCATATACAAGTACA
TGTTAAAGATCGTTGATAACGAGGAATTTTATGAGCAGGAGAAACCTCTTTCACTTAAAG
ATTTGAAGGCCCTGGTCCTCATTTTAAAGCAGGCTTTATGGCAACTTCTTTGGATTATCC
CTTCACATACCTCTCCTAGCCAGAAAGCCTTGCCCAATCCTTTAGGCCTTAAGAAAATGT
CCATCGACAGTCTTAAGAGCCAGGCAAGGATTGGGTTATCTGAATTACTCACCCAGTTAC
AAGACTGGAACAGCCGACTCCCATTCACCGCTGAAAGTGATTTCTATTCTCAAGAAGCAA
CAAGTGAAAATTTTGTTTCTCAGGCGATACTTGGCAACACTCGAGCATCAGAGATTATAA
AGCTTGCTCCCTTTTTGGCACCTTTTACCATTAGGGTTAAAATATTTACTTCACAGTTGG
CAAATTCTAAACAATCGACGGCATCTCATTCCGCCTTGACAAGACATCGGTTTAAAATAA
GAAGAAGCCGACTCCTTGAAGATGCTTTTGATCAGCTAAGCTTGCTCTCTGAAGAAGATC
TTAAAGGACCAATCCGAGTATCATTTGTTAATGAGCATGGTGTGGAAGAAGCTGGAATTG
ATGGAGGTGGAATTTTCAAAGATTTCATGGAAAATATCACTCGTGCTGCTTTTGATGTGC
AGTATGGCCTATTCAAGGAAACAGTCGACCATGTTCTGTACCCCAACCCTGGATCAGGAT
TGGTTCATGAGCAGCATCTGCAGTATTTCCATTTTCTTGGAAGTCTCCTTGGGAAGGCAA
TGTATGAGGGCATACTTGTTGATCTGCCATTTGCAACCTTCTTCTTGAGCAAGCTGAAAG
AGAAGTCCAACTTCTTGAACGATCTGCCTTCCTTGGATCCAGAGTTGTATCGACATCTTC
TATTTTTGAAGCATTACAAGGGCGACGTCTCATATTTGGAGTTGTACTTCGTTATTGTGA
ATAATGAATATGGTGAACAAGCTGAAGAAGAGCTCCTTCCTGGTGGGAGAGAGATGCGTG
TTACTAATCAGAATGTTATTACGTTTATCCACCTTGTTGCCAACCATCGATTGAACTATC
AGATCCGTGGACAAGGTAGACATTTTCTGAGAGGTTTTCAGAAGCTTATACCGAAGGAAT
GGATTGATATGTTCAATGAACATGAAATTCAGCTTCTCATATCTGGCTCTCTGGAAAGTT
TGGACATTGATGACTTGCGCTTAAACACCAACTATTCTGGAGGTTATCATCCGGACCATG
AGATTATCGATATGTTGTGGGAGGTTTTAAAGAGCTTCAGTTCAGATAATCAGAAAAAGT
TTCTCAAGTTTGTGACTGGATGTTCTCGCGGGCCACTCCTTGGATTTGAGTACCTTGATC
CTAAATTCTGCATTCAGAGAGCTGGTGTCCCTGGCTTGGAGGAGCATGGAGATCGTTTGC
CCACCTCGGCTACTTGCATGAACCTTCTTAAGCTCCCTCCTTACAGAACCAAGGAGCAGT
TGCAAACCAAGCTATTGTATGCAATAAACTCGGAAGCCGGTTTTGATCTGAGCTAATTGC
ATTGTGGATTCGGACATTGTGCACAGTGTAGATAGTTTCTAGATAACAGCTTAAAGGCAA
CCAAGACCGAAGCACCGACGACTTGGGCCCAATTTGAAGCCCAACAAACAAAGGGCGGAC
ATCTTTGGGTGGCTGGGGGAAATCAGAGGCGGCGCCTGCAACAGCTTAGTAGCCATGACA
AGGCCAATGGGCTGGCGGAGACAGTGGTAAAGGCAAGCAAGCGCAGATGCTGTTGTAAGC
AGCCATGAACATGTACATATGTATTAGTCGTTGTGATTGAATGGCCGCTTGTGGAATAAT
ACAAGGGATGAATGAACTTGATAGTTCGTAGGTCGTTAAATTTTAGTGTTGCGCCAGCTA
TGATCTGCATCCGTGGATGCTCTAGTTGCCTGCTAGAGTACCAGGGTTAGTTTACCTTTA
TATCCTGGCTCCGCTGGTCTACGTTAGCATTTGGCTATATACCCCTGCCCAGTAATGGTC
ATGATCAAGTATGCTATTTTGGATATAGTAAATCGTAAGAATTCAGTTA

Homology of Contig U35_17686 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g06690.2	1031	protein\|HECT-domain domain containing protein, expressed
Brachypodium v1_2	Bradi2g34820.1	967
Arabidopsis v10	AT3G17205.1	1029	\| Symbols: UPL6 \| ubiquitin protein ligase 6 \| chr3:5873528-5881132 FORWARD LENGTH=1029