barSeed - Barley Seed Development Database

Probe CUST_8855_PI390587928

Source Contig U35_17688

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8855_PI390587928	Hv_44K_v2	CACCCGCACTCGTGTGCAATGTTCGGAACCAAGGAATTTGACAGATCATATACCAAAAAA	1008	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.158	6.363	1.356	0.722	0.310	0.292
Raw	288.336	328.123	58.205	49.984	6.573	6.970

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC08236	1069	3e-25	999 - 1058	100	60 / 60	plus	ABC08236
Harvest35	U35_17688	1079	3e-25	1009 - 1068	100	60 / 60	plus

Contig Sequence (1079 bp)

>U35_17688 1079 Hv_44K_v2
CTCTGCCCCTCACAAGCCCCACACCCCGCTCCGCGGCCATGGAGACCCTCCTCTCCCCCT
CCGCATTGCTCGGCCCGCTCCGGGGCTCCAGGAAGCTAGCGGCCCCCGCCGCCGTCCCGT
GCAGCAGGTCCGCCGTCTCCTGCTCGCTCAAGAAGCAGACGCAGACGCAGGCGGGCGTCG
CCTGGCATGGAGACGGCGGCGTCGGGAGCTGGGCGTCGTTCTTGCACCACGGCCTCGCCG
CGGCGGCGCTGTCCCTGGCCCTCACTCTGTCGCCCGCGCCCGCGCCGGCCGTGGCGTCGG
AGTTCGACGTGCTCAACGACGGGCCGCCGGCCGACACGTACGTGGTGGACGACGCCGGCG
TGCTGAGCCGCGTGACCAAGTCCGACGTGAAGCGCCTCGCCCGCGACCTCGAGGCCCGCA
AGAACATCCGGATCAACTTCGTCACCGTCCGCAAGCTCACGAGCAAAGCTGATGCGTTCG
AGTACGCGGACCAAGTGCTGGAGAAGTGGTACCCGACGGTGGAGGAGGGCAGCAACAAGG
GGATCGTGGTGCTCGTCACCAGCCAGAAGGAGGGCGCCATCACCGGCGGCCCGGCCTTCG
TGCAGGCCATCGGCGACGCCATCCTCGACGCCACCGTCTCCGAGAACCTCCCAGTGCTGG
CGACGGACGAGAAGTACAACGAGGCGATCTTCTCGACGGCGAAGCGGCTGGTGGCGGCCA
TCGACGGGCTGCCGGACCCGGGCGGGCCGGCGTTCCAGGAGAGCAAGCGGGAGTCCAACT
TCAAGAGCAAGGAGGAGACGGACGAGAAGCGCGGGCAGTTCACGCTCGTCGTCGGCGGCC
TGCTCGTCATCGCCTTCGTCGTGCCCATGGCGCAGTACTACGCCTACATCTCCAAGAAGT
GATCCAGTCGAGCGCCGTGCACTGTACAGTACAGTAATTTTTCGAATCCCCCCGGTTTTC
TGTTGGACTAAAGTTTTAGAAGTGAACAGAGAGAGATCAATGCAAGCGCACCCGCACTCG
TGTGCAATGTTCGGAACCAAGGAATTTGACAGATCATATACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17688 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33280.1	362	4e-149	protein\|thylakoid lumen protein, putative, expressed
Brachypodium v1_2	Bradi2g25910.1	293	5e-149
Arabidopsis v10	AT1G54780.1	285	4e-117	\| Symbols: TLP18.3 \| thylakoid lumen 18.3 kDa protein \| chr1:20439533-20440953 FORWARD LENGTH=285