barSeed - Barley Seed Development Database

Probe CUST_8845_PI390587928

Source Contig U35_43957

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8845_PI390587928	Hv_44K_v2	ATCATTCCGCCGCCAAGGCCAAGAGAAGAGTAGACTACAGCGACGACGACGACGACAAAG	553	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.305	0.283	0.526	1.678	1.583	2.661
Raw	37.613	51.894	92.665	445.002	147.554	276.432

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249893.1	944	2e-24	558 - 617	100	60 / 60	plus	ABC08238
MLOC	MLOC_7215.1	1033	2e-24	341 - 400	100	60 / 60	minus	ABC08238
JLOC1	JLOC1_4757.1	1072	8e-25	634 - 693	100	60 / 60	plus
Harvest21	ABC41296	613	3e-25	554 - 613	100	60 / 60	plus
Harvest21	ABC08238	952	3e-25	540 - 599	100	60 / 60	plus	ABC08238
Harvest21	ABC08237	712	3e-25	534 - 593	100	60 / 60	plus
Harvest35	U35_43957	613	3e-25	554 - 613	100	60 / 60	plus
Harvest35	U35_3516	955	3e-25	543 - 602	100	60 / 60	plus
Harvest35	U35_3514	712	3e-25	534 - 593	100	60 / 60	plus

Contig Sequence (613 bp)

>U35_43957 613 Hv_44K_v2
CAGTTCCCTTTCCTCTTCTGCTTCCTTGAGCTGGGAGCTGCTTCAGCCATGTCCTCCTTC
TCCAGGTTCGAGGGTAGTAAAGGAGGAGGCGGGAGATCCATATCGCTGGCTGCCTCCAGG
GCCAAGCTCGCCGCGGCCACCGCCACAGCCAAGAAAGCTACTACGGCCGCCCGGGGCAAG
GGCAAGGCCAAGGGCAAGGCGGCCAAGAAGGTCTTCTCCCTCACCGGCCAGAAGTTCGAA
ACACCAGAGGAGAGGGAGCCCCTCAGGATCTTCTACGAATCGCTCTCCAAGCAGATCCCA
TCCAGCGAGATGGCCCAATTCTGGTTAATGGAGCATGGGCTGCTATCTCCGGAAAGAGCA
AAGCAAGCCTACGACAGGAAGCTCAAACGGCAGCAGCAGATCAAATCAGGGACCCCGATT
AAGGCGTCCAATTCCACCACCGTCACCAAATTCAACAACAACAACAACAACAACAACAAC
AACAACAACAAACCTGCGGAGAGCTCGAAGAAACCGGCGGTTGTTCCTTCTTCCACATCC
CGAAGCAGCACGGATCATTCCGCCGCCAAGGCCAAGAGAAGAGTAGACTACAGCGACGAC
GACGACGACAAAG

Homology of Contig U35_43957 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None