barSeed - Barley Seed Development Database

Probe CUST_8842_PI390587928

Source Contig U35_29666

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8842_PI390587928	Hv_44K_v2	TCTGATCCGGGAGAGATTGCGACCCGGCCGTCTCATGCTTGTTTCTGTTTCTTGTTCCGG	98	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72315.3	559	2e-24	132 - 191	100	60 / 60	minus	ABC09135
MLOC	MLOC_72315.1	1252	2e-24	998 - 1057	100	60 / 60	minus	ABC09135
MLOC	MLOC_72315.2	405	2e-24	156 - 215	100	60 / 60	minus	ABC09135
Harvest21	ABC29055	173	3e-25	99 - 158	100	60 / 60	plus
Harvest35	U35_29666	173	3e-25	99 - 158	100	60 / 60	plus

Contig Sequence (173 bp)

>U35_29666 173 Hv_44K_v2
CGCTCACCAGTCCCGGCCGTCTCCGACCTGGCGCTCCTTCTACGTCTTATTCCCTCACCG
GTACACTGCACCGGCGCCGCCCCCACCCCACGGTTCGGTCTGATCCGGGAGAGATTGCGA
CCCGGCCGTCTCATGCTTGTTTCTGTTTCTTGTTCCGGCCTCCTCTCGGGGCT

Homology of Contig U35_29666 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None