- Probe CUST_8839_PI390587928
- Source Contig U35_29668
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8839_PI390587928 | Hv_44K_v2 | GTGTGATCTTCGTGTTGTGTCCAACTGTTACTCCAGTGTGTGTATGTGTGTGTGTAGTTC | 249 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.997 | 1.346 | 1.101 | 0.801 | 0.225 | 0.226 |
| Raw | 2162.723 | 2189.639 | 1577.680 | 1769.849 | 181.001 | 198.334 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_57106.1 | 1989 | 2e-24 | 162 - 221 | 100 | 60 / 60 | minus | ABC29060 |
| JLOC1 | JLOC1_36963.1 | 2017 | 8e-25 | 1782 - 1841 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29060 | 383 | 3e-25 | 250 - 309 | 100 | 60 / 60 | plus | ABC29060 |
| Harvest35 | U35_29668 | 383 | 3e-25 | 250 - 309 | 100 | 60 / 60 | plus |
Contig Sequence (383 bp)
>U35_29668 383 Hv_44K_v2 GTGGTGCTCCTGGCCGTGAAAGACGAGGACTACTCCGTGTCCAACGTCGACGACGCCGGC AAGGAGAAAGACACCAAGATGGCCGCGCCGTCAAGCTTCCACTGAGGAGAGCTCGCTAGT GTTTTCTCAGTCCTTCATCAGCGTGTTCGTCTGCAGCGATCGTCTTGCGAGTGCAGTGGT GCAGGCGCGAGTGCTCTAGCTGCTCGATCGCCGCGCAATCTTCGCGTCCTGTCAGATTGT TAATCCGGTGTGTGATCTTCGTGTTGTGTCCAACTGTTACTCCAGTGTGTGTATGTGTGT GTGTAGTTCATGGCGGCGGTGGTGGTGTTCATTGGTAACATCATGTGATAATTTTTTCTC TGTTTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_29668 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |