barSeed - Barley Seed Development Database

Probe CUST_8838_PI390587928

Source Contig U35_29669

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8838_PI390587928	Hv_44K_v2	AATTCACAAGGAAAGCGCCAAGTGGAATCTGCAGATAAAACCAAACCCAACAGCGAAGTT	536	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.953	1.446	1.336	0.827	0.909	0.626
Raw	20.483	19.967	18.677	16.405	6.607	4.643

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78180.3	2013	2e-24	1379 - 1438	100	60 / 60	minus	None
MLOC	MLOC_78180.1	2544	2e-24	1913 - 1972	100	60 / 60	minus	None
MLOC	MLOC_78180.2	2683	2e-24	2052 - 2111	100	60 / 60	minus	None
MLOC	AK375886	3179	7e-23	569 - 628	98	59 / 60	plus	ABC25813
JLOC1	JLOC1_52109.1	2789	8e-25	574 - 633	100	60 / 60	plus
Harvest21	ABC29063	629	3e-25	537 - 596	100	60 / 60	plus
Harvest35	U35_29669	629	3e-25	537 - 596	100	60 / 60	plus

Contig Sequence (629 bp)

>U35_29669 629 Hv_44K_v2
CCTCTCACCCTCTCCCGAAGCCTAAGTCTTCCCTGCCGCCGGCCGCCTCCTCTGGTCTAG
CTCGCCAGCGGCCTGCTACCCCGTTATTTTGGTCTGTTATTATCCCAGAAGCTGCAATGA
CGGAAATTGAAAAGCCGAATATCCAGAAGGCTACATCAAGTGATTACTGGAGTTTGGCCA
GCAACCAGTATCCATCTGGTAAATTTCCTAAGGTATCAATTGGCATCCCAATTCCAAGGC
CAGGTTCTGTATCGAGAAGCAGAGATGCTGCTACTGCCCCTGCATTTGAGAGGAACCTGT
CTCAGGGAACTGATGGAAGATCTAGACCCCCGAGAGGTTATAATGCTTCACTCCGGGTCT
CACAAGAAGCTGCAAACCATGGCGGATCTGCTACAGAGGCACCAGAAGCCGCCCCTGTTA
AGGTTTCTCTATCACAACCTGATGACCATTCACCTGAGCAAACCGGAACCTTTTCCTTTG
GAACAAGAAAAGAACAAGACAGCCAGCTTGACCAACTGCAAAAGACACCCTTAGTGAATT
CACAAGGAAAGCGCCAAGTGGAATCTGCAGATAAAACCAAACCCAACAGCGAAGTTCTCA
CGATGAAGCTGTGGGAGATCCTTGGTACA

Homology of Contig U35_29669 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g26560.1	815	5e-82	protein\|expressed protein
Brachypodium v1_2	Bradi3g59847.1	851	3e-86
Arabidopsis v10	None