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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_8835_PI390587928Hv_44K_v2CATGATCTTGCTGAGAACCTTGTCACAACCACAAGGAGTTGTTAAAAGAAGGCCAAGGCT768GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.1501.8471.0580.8630.4040.428
Raw 722.998959.549481.770618.529101.664119.106



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC078748313e-25769 - 82810060 / 60plusABC07874
Harvest35U35_176908313e-25769 - 82810060 / 60plus



Contig Sequence (831 bp)

>U35_17690 831 Hv_44K_v2
GAGTCCTCCCTGATTCCCACCTTTCTCTTCTCCATCCCTAGCGCCGCCGGCGGCTTGTAG
AGAGGCGAGCCGAGAGGTGCAGCGGGCTACGAGTGGAAGAGGCGAGGAGATCGAGCGAGC
GATGGGGCGGAGAATCCTCAACGACGCGCTGCGCACGATGGTGAACGCGGAGCGGCGGGG
GAAGGCGACGGCGCAACTCCAGCCCATCTCCGGCGTCATGATCTCCTTCCTCAACATCAT
GAAGCACCGAGGTTACATAAAAAATTTCGAGGTCTTCGATCCACATAGGGTTGGAAAAAT
CACAGTGGAACTTCAAGGAAGGATCAAAGATTGCAAAGCTCTCACTTACAGGCAGGACCT
CAGAGCTACGGAAATAGAAAAATACAGAACTAGGATGCTTCCAACACGGCAGTGGGGCTA
TGTTGTGGTGACCACCCCAAATGGTGTTTTAGATCACGAGGAAGCAATTAGGCAGAATGT
AGGGGGCCAGGTCCTTGGTTACTTCCATTGAGAAGGAAACAGAGTCATCACATGCTGAAT
CAGCCCTGGGTTGCGTTGTTATCTTTCTGTTATGACTGAAGTCATTTTATTTGGACATTT
AGAGCTCGCTGCTTTTGTTCATGGCCACAGAAAATGCGATTACATGTCAAAAGTATGTCT
CGTGACAATAACATAAATATTGTAATCCTTGTATGGGAGAGATATTTCTGTAGGTGTAAT
ACACCCATGTACTTTGAGATACATGAGTAACGCTCTATTTCAAGCATCCATGATCTTGCT
GAGAACCTTGTCACAACCACAAGGAGTTGTTAAAAGAAGGCCAAGGCTCAT



Homology of Contig U35_17690 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g15610.11301e-80protein|40S ribosomal protein S15a, putative, expressed
Brachypodium v1_2Bradi2g08210.11301e-84
Arabidopsis v10AT4G29430.11291e-70| Symbols: rps15ae | ribosomal protein S15A E | chr4:14472440-14473383 FORWARD LENGTH=129