- Probe CUST_8832_PI390587928
- Source Contig U35_31985
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8832_PI390587928 | Hv_44K_v2 | AATAAGGAAGGAAAGGTGGTTTCTTGTCATGTTGTTCTTGAACCCATACACGTGTTTCTC | 431 | GeneList: orange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.753 | 0.833 | 1.939 | 2.143 | 0.884 | 0.831 |
| Raw | 110.174 | 190.816 | 390.940 | 700.570 | 99.858 | 102.107 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_7019.3 | 1674 | 7e-23 | 435 - 495 | 98 | 60 / 61 | plus | ABC17944 |
| MLOC | MLOC_7019.6 | 1605 | 7e-23 | 1017 - 1077 | 98 | 60 / 61 | minus | ABC17944 |
| MLOC | MLOC_7019.5 | 1027 | 7e-23 | 689 - 749 | 98 | 60 / 61 | minus | ABC17944 |
| MLOC | MLOC_7019.10 | 1685 | 7e-23 | 1191 - 1251 | 98 | 60 / 61 | minus | ABC17944 |
| MLOC | MLOC_7019.9 | 1662 | 7e-23 | 1086 - 1146 | 98 | 60 / 61 | minus | ABC17944 |
| MLOC | MLOC_7019.1 | 2187 | 7e-23 | 791 - 851 | 98 | 60 / 61 | minus | ABC17944 |
| MLOC | MLOC_7019.2 | 2515 | 7e-23 | 1119 - 1179 | 98 | 60 / 61 | minus | ABC17944 |
| MLOC | MLOC_7019.7 | 1488 | 7e-23 | 993 - 1053 | 98 | 60 / 61 | minus | ABC17944 |
| MLOC | MLOC_7019.8 | 2795 | 7e-23 | 1202 - 1262 | 98 | 60 / 61 | minus | ABC17944 |
| MLOC | MLOC_7019.4 | 1201 | 7e-23 | 707 - 767 | 98 | 60 / 61 | minus | ABC17944 |
| JLOC1 | JLOC1_4621.2 | 1363 | 4e-23 | 439 - 499 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_4621.1 | 1691 | 4e-23 | 439 - 499 | 98 | 60 / 61 | plus | |
| Harvest35 | U35_31985 | 491 | 3e-25 | 432 - 491 | 100 | 60 / 60 | plus |
Contig Sequence (491 bp)
>U35_31985 491 Hv_44K_v2 GGTCAAGCCAACCCAACCACATCGCGCACCCAGGCCAGGAGCGAGCGAGACGAGCCGCCG CCGAACCCTAGCTAGCCCCTCCCCTCCCCTCCGCCGCGGCCGCCGGAAGCCCCGCCGTCG CCGACGACTCCGTCGCAGCCGTCGTCACCGCCCCGACCCGCGCCATGGCCGACTCCCCGC GCCGGAGGTACACGAGGCCCTCAAGGTCCCCGTCACCTTATAAGGGACGCCAAAAGCAAA TGTCAAGGTCAAGATCACCTGTAGCCCAATCCCAGTCTAGATCTCCATCACCTGATCCTA GATCTCAGGCAAGGTCAAGATCTCGAAGCCCTGCGAGGGAACGGGAGCCTGAAGCTGTTA ATCATGGAAATACTCTGTACATCACTGGACTTTCTTCTAGGGTGACTGANTAAGAACTTA GAGAGTACTTCAATAAGGAAGGAAAGGTGGTTTCTTGTCATGTTGTTCTTGAACCCATAC ACGTGTTTCTC
Homology of Contig U35_31985 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |