barSeed - Barley Seed Development Database

Probe CUST_882_PI390587928

Source Contig U35_10880

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_882_PI390587928	Hv_44K_v2	TCAAGGGCCCGGACGGAGGACCTCGACATGATGGAGTCCCCCGGGCTAATCACATTCATG	330	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.156	3.158	1.188	0.719	0.832	0.944
Raw	59.161	40.287	14.059	12.792	3.437	5.892

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252063.1	1710	3e-22	1411 - 1466	100	56 / 56	plus	None
MLOC	MLOC_16097.1	2696	3e-22	560 - 615	100	56 / 56	minus	None
MLOC	MLOC_16097.2	2547	3e-22	560 - 615	100	56 / 56	minus	None
JLOC1	JLOC1_11067.1	2433	1e-22	1679 - 1734	100	56 / 56	plus
Harvest21	ABC23516	397	3e-25	331 - 390	100	60 / 60	plus
Harvest21	ABC34732	663	5e-23	580 - 635	100	56 / 56	plus
Harvest35	U35_10880	398	3e-25	331 - 390	100	60 / 60	plus
Harvest35	U35_6141	1345	5e-23	1034 - 1089	100	56 / 56	plus

Contig Sequence (398 bp)

>U35_10880 398 Hv_44K_v2
CGGTAGCGGAGCTGGTGAGGAACCCCAGGGTGCAGCACAAGGTGCAGGAGGAGCTGGACC
GGGTGGTCGGCCGCGACCGGGTGCTGTCGGAGACGGACTTCCCGAGCCTGCCGTACCTGC
AGGCCGTCGTGAAGGAGTCGCTCCGGCTGCACCCGCCGACGCCGCTGATGCTCCCGCACA
AGGCCAGCGCCGCCGTGAAGGTCGCCGGCTACGACATCCCCAAGGGAGCCAGCGTCACGG
TGAACGTGTGGGCGATCGCGCGCGACCCCAAGGCGTGGGACGCCCCGCTCGAGTTCAAGC
CCGAGCGCTTCCTCCACGACAACATCGACATCAAGGGCCCGGACGGAGGACCTCGACATG
ATGGAGTCCCCCGGGCTAATCACATTCATGCGCACGCC

Homology of Contig U35_10880 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g41440.2	363	1e-60	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi2g21300.1	515	2e-58
Arabidopsis v10	AT2G40890.1	508	1e-52	\| Symbols: CYP98A3 \| cytochrome P450, family 98, subfamily A, polypeptide 3 \| chr2:17058291-17060532 REVERSE LENGTH=508