barSeed - Barley Seed Development Database

Probe CUST_8829_PI390587928

Source Contig U35_17694

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8829_PI390587928	Hv_44K_v2	TGGGAAACTATTTGCAAGCAATGTAGGCTAATTAAGCTGGTAGCTTTTGGCGTCAAAAAA	1213	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78810.1	1014	9e-22	894 - 948	100	55 / 55	plus	ABC07757
MLOC	MLOC_78810.2	1003	9e-22	883 - 937	100	55 / 55	plus	ABC07757
JLOC1	JLOC1_52520.2	1025	5e-22	902 - 956	100	55 / 55	plus
JLOC1	JLOC1_52520.1	1014	5e-22	891 - 945	100	55 / 55	plus
Harvest21	ABC07757	1284	3e-25	1214 - 1273	100	60 / 60	plus	ABC07757
Harvest35	U35_17694	1284	3e-25	1214 - 1273	100	60 / 60	plus

Contig Sequence (1284 bp)

>U35_17694 1284 Hv_44K_v2
ATGGACAAGAAGCTTTTGACAGATCAATCTTCCGTGGCTGCCTTCTTAACGATGTTTGCC
AGGAGATGTCAGGATATGATATTGCTAGAGAATATTTTGTATCTAAGCACATCGATCCTT
CTTGTGATCCAAAAGATATGGTACGGAGATTAACACATCCTTATCTTCGGAGGTGTGCGT
TGCTTTGGGAGCTGCTAAAATCCTCGTCCTCAGCACCCTTATATGACAGTTCCAATATTT
GGGAAGGGTCACATCTTCACTTAGATAGTAGCACAGCGGAAGGCAATTCTTCACTCGCAA
TGGAGCTGGATGGAGTACGAGAACTGGAACACCTCTTTCAAATTCAGTCGCTGGACCTGA
TTCTCAAAGATGAGTGTGTACATATGCTTGCCTTAAGATGGTCTCAACATTTCTGTGAAG
ACTATAGATCTCGCAAGTATAGAGGCATCCTCTTTTCTACCCCTGCGGTCCCATTCAGGC
TGATGCAGTTACCACCTGTCTACCAAGTTCTTCTAGAAAGATATGTCAAGATGCATTGCC
CTGATTGTGGTTCAGTGCCTGATGAGCCAGCTTTATGTTTGCTTTGTGGCAAGCTATGCT
CACCTAGTTGGAAACCATGCTGCAGGGCCGGTAAATGCCTAAATCATGCGTCTCAGTGTG
GTGCTGGTGTTGGCATATTTCTTTTGGTGAGGAAAACAACAATCCTGTTGCAACGATCGG
CTCGTCTTGCATTTTGGCCATCTCTGTACCTTGATGCCTTCGGTGAGGAGGATCATGAAA
TGCACAGAGGAAAGCCTTTATATCTTAGCCAAGAAAGATATGCAGCCCTCACATATCTGG
TGGCATCTCATAGCCTTGACCGGACTTCTGAAGTTCTGCGGCAAACAACTATCAGCTTTT
ATACATCTGATTAAGCGCATTGTTTTGAGGAACAATGCCCAAAGGATCATGTGATGTGCA
TATTTTCTGGAACTGTCGTCTAGCTTCATATTCATGCTTTCCAGTGATAGCGAATTGCAT
CCATTCCTAAGGTGTCGCGGATTCTGCCAGACTATCGAGCCATGCTTCGCTGCTTCAGAC
CTCGTTCTCGCGCACAATGTACAGTGGTGCCTATGATGTCCCTTTTGTCTTTATTTTTCG
TTCTGTTAGGCTGTGATTGGATGGTTGGTTGTACTGTTCACATTGTACAAATTCATTGGT
CTGAAGTTCGCCGTGGGAAACTATTTGCAAGCAATGTAGGCTAATTAAGCTGGTAGCTTT
TGGCGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17694 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05500.2	2057	2e-175	protein\|zinc finger protein, putative, expressed
Brachypodium v1_2	Bradi2g03180.1	2081	0.0
Arabidopsis v10	AT5G02310.1	2006	7e-85	\| Symbols: PRT6 \| proteolysis 6 \| chr5:474279-482552 FORWARD LENGTH=2006