barSeed - Barley Seed Development Database

Probe CUST_8827_PI390587928

Source Contig U35_17695

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8827_PI390587928	Hv_44K_v2	CGCATTGTTTTGAGGAACAATGCCCAAAGGTTTGGATAATGATCATGTGATGTGCATATT	284	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78810.1	1014	2e-24	585 - 644	100	60 / 60	plus	ABC07757
JLOC1	JLOC1_52520.2	1025	8e-25	593 - 652	100	60 / 60	plus
Harvest21	ABC07758	648	3e-25	305 - 364	100	60 / 60	minus
Harvest35	U35_17695	610	3e-25	285 - 344	100	60 / 60	plus

Contig Sequence (610 bp)

>U35_17695 610 Hv_44K_v2
TAAATGCCTAAATCATGCGTCTCAGTGTGGTGCTGGTGTTGGCATATTTCTTTTGGTGAG
GAAAACAACAATCCTGTTGCAACGATCGGCTCGTCTTGCATTTTGGCCATCTCTGTACCT
TGATGCCTTCGGTGAGGAGGATCATGAAATGCACAGAGGAAAGCCTTTATATCTTAGCCA
AGAAAGATATGCAGCCCTCACATATCTGGTGGCATCTCATAGCCTTGACCGGACTTCTGA
AGTTCTGCGGCAAACAACTATCAGCTTTTATACATCTGATTAAGCGCATTGTTTTGAGGA
ACAATGCCCAAAGGTTTGGATAATGATCATGTGATGTGCATATTTTCTGGAACTGTCGTC
TAGCTTCATATTCATGCTTTCCAGTGATAGCGAATTGCATCCATTCCTAAGGTGTCGCGG
ATTCTGCCAGACTATCGAGCCATGCTTCGCTGCTTCAGACCTCGTTCTCGCGCACAATGT
ACAGTGGTGCCTATGATGTCCCTTTTGTCTTTATTTTTCGTTCTGTTAGGCTGTGATTGG
ATGGTTGGTTGTACTGTTCACATTGTACAAATTCATTGGTCTGAAGTTCGCCGTGGGAAA
CTATTTGCAA

Homology of Contig U35_17695 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g03180.1	2081	1e-52
Arabidopsis v10	None