barSeed - Barley Seed Development Database

Probe CUST_8825_PI390587928

Source Contig U35_17696

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8825_PI390587928	Hv_44K_v2	CCAACAGTTTTTCTTCAGTGTACTGTGGAAATGAGAGCCTAATGTAATCTCTTATTCAAC	2023	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61918.1	5143	2e-24	3116 - 3175	100	60 / 60	plus	ABC08274 ABC13318 ABC40378 ABC42182
MLOC	MLOC_61918.2	4044	2e-24	3093 - 3152	100	60 / 60	plus	ABC08274 ABC13318 ABC40378 ABC42182
MLOC	MLOC_61917.2	2586	2e-24	1792 - 1851	100	60 / 60	plus	ABC08274 ABC13318 ABC40378 ABC42182
JLOC1	JLOC1_40485.1	3435	8e-25	1957 - 2016	100	60 / 60	minus
JLOC1	JLOC1_40484.1	5537	8e-25	1815 - 1874	100	60 / 60	plus
Harvest21	ABC08274	2311	3e-25	2024 - 2083	100	60 / 60	plus	ABC08274
Harvest35	U35_17696	2105	3e-25	2024 - 2083	100	60 / 60	plus

Contig Sequence (2105 bp)

>U35_17696 2105 Hv_44K_v2
TTGCTTACAGCTGTATGCCATATATTATTGATGGAGCACTCAGTGAAAATAGTTCATATG
GAGGATTTGAACATTCTGGCATTCCAGATGGCATTCCTCAACTGGAAGAGTACCTAGCTG
TGTACTGCTCTATGTCTGCACGACCTTGGCCTGCAGCAAATTGGAAGTTCTACATTGCCT
TTTCACTGTTTCGAGGGGCATCTATCTATGCAGGAGTATACCACAGATGGACTATGGGTA
ATGCTTCAGGCGGTGAGCGTGCTAGATTTGCCGGCAAGGCTGGCAATGTTATGGTTGACT
GTGCCTGGGATTACATTAATAGAGAAAATGTCCTGAGAGCACACCCTGCTACAGGTATGC
ATGTCTCGAAGGCTCCCCAACAAGGTTTCCATGTAGAGCAGGAAGATTCAACTTTGACAA
GTGGTCAAGGCAAATTTGTTCCTAGCGAAAAGGTTATGAAGCTACAGCATAAAATAATGA
AGTTCATGAAAGATCATATATACCCCAAGGAAGATGAGTTATACAAACATGCACAATCAA
CCTCACGGTGGACAATCCATCCTGAAGAAGAAAATTTGAAAGCATTAGCAAAAGAGGAGG
GATTGTGGAACTTATTTATTCCGCTTGACAGTGCAGCTAGAGCAAGAAAGCTACTCCTTG
AGGACCGATCTTATGTTTCTGCTGGAAGTTCAAATGATCTTTTGCTAGGTGCTGGTCTCA
CAAATCTTGAGTATGGATATTTATGTGAGATTATGGGCCGTTCAGTTTGGGCTCCACAAA
TATTTAACTGTGGTGCACCCGATACGGGTAATATGGAGGTCCTGTTGAGATATGGAACTA
AGGAGCAACAGAAGCAGTGGCTTGTTCCTTTACTGGAAGGGAAAATTCGTTCGGGATTTG
CAATGACAGAACCACAAGTTGCATCTTCAGATGCAACAAACATAGAATGTTCAATATCCA
GGCAGAGAGATTTCTATGTGATAAATGGCAGGAAATGGTGGACCAGTGGGGCTATGGACC
CGAGGTGCAAAATCCTGATATTAATGGGAAAAACCGATTTCTCTGCACCTAAGCATAAGC
AGCAGTCAATGATCTTAGTGGATATCAACACTCCCGGAGTGCAAATAAAGAGACCATTGT
TAGTCTCTGGGTTCGATGATGCACCGCATGGACATGCAGAGATTATTTTTGATAACGTCC
GTGTTCCGGTCACAAATATCCTCCTCGGAGAAGGGCGTGGTTTCGAGATTGCTCAAGGAA
GACTAGGTCCTGGAAGATTGCATCATTGCATGAGACTAATAGGAGCAGCTGAACGTGGCA
TGAATATGATGGTTGAGAGGGCCTTAAGTAGGACCGCTTTTGGAAAGAAGATTGCGCAGC
ATGGTTCCTTTCAGTCAGACCTGGCAAAATGCCGGATAGAACTGGAGCAAACTAGGCTTC
TGGTGCTTGAAGCAGCCGATCAGCTCGACCGGCATGGGAACAAGAAGGCCCGCGGGATTC
TCGCAATGGCCAAGGTGGCGGCTCCAAATATGGCCCTGAAAGTGCTTGACATGGCAATAC
AAGTCCACGGCGCTGCCGGGGTCTCATCCGACACGGTCCTATCCCATCTATGGGCAACCG
CTAGGACACTGCGGCTCGCCGACGGCCCTGATGAAGTCCATCTCGGCACGATCGCGAAGC
TGGAGCTGCAAAGGGCAAGGCTGTAAGATCAGGACGAGGTCCAGATTCAATAAGGGGGAC
GGCAAACCTTTGGAGAAGGTCAGTTAAGGATATCATCACAGTCACGGGTAGATAGAATGG
TGAATAAGTGGCGTTAGATTCCTCCATGTACACTCCCTGTTTGCCTTGTCGATTCCATTG
TCATTTGTCCATCAGAACCATGACACATCTTTAATGTTCGTCCTCTTGTTGTAAAGAGTC
CAACCCTACCAGCAACAGTTACATGAGTACCAGTGATGACTATTACAGATCTGGACAATA
GTCTCAGTAGTACCAATGCGTATTTCAGATTTGAACGTCGGCGCCAACAGTTTTTCTTCA
GTGTACTGTGGAAATGAGAGCCTAATGTAATCTCTTATTCAACTTTTTAAAAAAAAAAAA
AAAAA

Homology of Contig U35_17696 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g47820.1	832	protein\|acyl-CoA dehydrogenase family member 10, putative, expressed
Brachypodium v1_2	Bradi1g17950.1	839
Arabidopsis v10	AT3G06810.1	824	\| Symbols: IBR3 \| acyl-CoA dehydrogenase-related \| chr3:2146534-2150654 FORWARD LENGTH=824