barSeed - Barley Seed Development Database

Probe CUST_8822_PI390587928

Source Contig U35_17699

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8822_PI390587928	Hv_44K_v2	CTTTTGTAATCCTTAATTAATAGGAAGGGCGTCCTTGTATTGATTCGTTCCCAACAATAA	482	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.287	1.398	1.132	0.806	0.338	0.250
Raw	6685.060	11107.280	8112.770	8803.580	1335.942	1074.050

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362026	3555	2e-24	3480 - 3539	100	60 / 60	plus	ABC08447
MLOC	MLOC_11621.2	2307	2e-24	21 - 80	100	60 / 60	minus	ABC08447
MLOC	MLOC_11621.3	2309	2e-24	21 - 80	100	60 / 60	minus	ABC08447
MLOC	MLOC_11621.1	2235	2e-24	33 - 92	100	60 / 60	minus	ABC08447
JLOC1	JLOC1_7717.1	2378	8e-25	2237 - 2296	100	60 / 60	plus
Harvest21	ABC08448	575	3e-25	34 - 93	100	60 / 60	minus
Harvest21	ABC08447	2245	5e-23	2169 - 2227	98	59 / 60	plus	ABC08447
Harvest35	U35_17700	2265	3e-25	2167 - 2226	100	60 / 60	plus
Harvest35	U35_17699	578	3e-25	483 - 542	100	60 / 60	plus

Contig Sequence (578 bp)

>U35_17699 578 Hv_44K_v2
CAGAAAAGGAGGGAAGGGCATGAGATTGGGCAAAGTCGTCGGTCCGTCAGGTGTCCAGGG
CGTAGCACATTGTGTGGTTTCCTATATGATGATGATGCGATTGATTGGTTGATTCTGCCT
GCCTGGGTTGGCTGGTGTTGTATGCTGTCCTCTGGTTGTACACAGGTCTGCTCAAAAGTG
TAGCGTGACTGAGTCGAGGAATTGAATTGCGACGGGAGGACGTCTGCTTTTGTCGAGTCG
GAAAAGGCGGTGTGGTTGTGCGTCTTGTAGGTTATAGGAGGACTTGGGTTTGGTCTGTCT
GTCGAGTCAAAATTTGTATTGGCTGGTTCCAGTGGGGGCTTTTTTGGGGTTTTGGTGTCG
CGCTCCATTGGCAACCCCAGCAGCAACATTCAAAGAGTTCTTTTGTAGCATGTATTCTAT
TCTATTCTATGTGAGAGAAAAAGAGAGAAAGAGAGAGAGAGAGAGTTTAGGTCTAGGGTT
TGCTTTTGTAATCCTTAATTAATAGGAAGGGCGTCCTTGTATTGATTCGTTCCCAACAAT
AAAAAAAGAGATTGGAGCAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17699 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None