- Probe CUST_8820_PI390587928
- Source Contig U35_29671
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8820_PI390587928 | Hv_44K_v2 | CAACAGCTATTTACTTTCGCTTCTTGCAGTAAGAATTGGTGGTTTTGAGATGGCAAAAAA | 91 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.086 | 1.819 | 1.160 | 0.817 | 0.289 | 0.254 |
| Raw | 28.813 | 72.992 | 42.000 | 49.208 | 4.202 | 4.379 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_76840.1 | 583 | 7e-23 | 390 - 446 | 100 | 57 / 57 | plus | ABC29069 |
| Harvest21 | ABC29069 | 162 | 3e-25 | 92 - 151 | 100 | 60 / 60 | plus | ABC29069 |
| Harvest35 | U35_29671 | 162 | 3e-25 | 92 - 151 | 100 | 60 / 60 | plus |
Contig Sequence (162 bp)
>U35_29671 162 Hv_44K_v2 GTAACCTGTAATATTATGGACTACAGTACTTATCTAAAACTTGATACACTTGTATTTTGA AAAAAAAACTTGATAAACTTCCTGTTTTCTGCAACAGCTATTTACTTTCGCTTCTTGCAG TAAGAATTGGTGGTTTTGAGATGGCAAAAAAAAAAAAAAAAA
Homology of Contig U35_29671 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |