barSeed - Barley Seed Development Database

Probe CUST_8811_PI390587928

Source Contig U35_29677

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8811_PI390587928	Hv_44K_v2	TTTCTGGACACGACTACGCCATGGCGTTGAAGAAGAGCCTCCTCTACTTCGAGGCGCAGA	76	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365386	2004	2e-24	144 - 203	100	60 / 60	plus	ABC10396 ABC21934
MLOC	MLOC_8269.1	302	2e-24	18 - 77	100	60 / 60	minus	None
JLOC1	JLOC1_5490.1	1541	8e-25	131 - 190	100	60 / 60	plus
Harvest21	ABC29080	530	3e-25	77 - 136	100	60 / 60	plus
Harvest35	U35_29677	530	3e-25	77 - 136	100	60 / 60	plus

Contig Sequence (530 bp)

>U35_29677 530 Hv_44K_v2
GCCATGAGCAGTGCCGCTCATGTCGCTGCTGCTGCCATCATCGGTCTCATGGCACTCGCG
TCAATGGCGAAGCTCGTTTCTGGACACGACTACGCCATGGCGTTGAAGAAGAGCCTCCTC
TACTTCGAGGCGCAGAGGTCCGGCGCGCTCCCCCCTGACCAGAGGGTCACCTGGAGAGCC
AGCTCCGGCCTCTTCGACGGCAAGGCCAACGGAGTGGATCTTGTGGGAGGCTACTACGAC
GCAGGCGACAACGTCAAGTTCGGGCTGCCCATGGCGTTCACGGTGACCATGATGTCCTGG
AGCATCCTCGAGTACGGCAAGCAGATGGCCGCCTCCGGCGAGCTCAAGAACGCCATGGAC
GCCGTCAAGTGGGGCACGGACTACTTCATCAAGGCGCACCCCGAGCCCGACGTGCTCTAC
GGCGAGGTTGGCGACGGCGACACGGATCACACCTGCTGGCAGCGGCCCGAGGACATGACG
ACGAGCCGCCAGGCGTTCCGCATTGATCCCCAGAATCCCGGGTCGGACCT

Homology of Contig U35_29677 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g12150.1	630	2e-98	protein\|endoglucanase precursor, putative, expressed
Brachypodium v1_2	Bradi2g32270.1	632	8e-99
Arabidopsis v10	AT1G64390.1	620	2e-84	\| Symbols: AtGH9C2, GH9C2 \| glycosyl hydrolase 9C2 \| chr1:23911329-23914642 FORWARD LENGTH=620