- Probe CUST_8810_PI390587928
- Source Contig U35_29678
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8810_PI390587928 | Hv_44K_v2 | CGTCTCGCCGGCCGAGTACAACGCCGCCAAGAGGCCCCTCGTGCAGCGCCTCGCCGAGCT | 411 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.017 | 1.367 | 2.436 | 1.209 | 0.892 | 0.796 |
| Raw | 8.756 | 16.351 | 28.156 | 21.473 | 4.634 | 4.248 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_54621.3 | 1465 | 2e-24 | 938 - 997 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_54621.1 | 1872 | 2e-24 | 1255 - 1314 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_35166.1 | 1811 | 8e-25 | 498 - 557 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29081 | 471 | 3e-25 | 412 - 471 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29678 | 471 | 3e-25 | 412 - 471 | 100 | 60 / 60 | plus |
Contig Sequence (471 bp)
>U35_29678 471 Hv_44K_v2 CACGCTTCCGACGCCAACAGCCCGCCGGCGCAGCAAGCAAGAAAGCAGGCTCGCTCTCCA CTGCACCGCGGCGATGGGGTACACGTACACGCCGACCTACTACTCGGGCCTGCAGGAGAC CATCGCGTCCGTCTGCAAGTCCATCTTCAGCCGCCCCGGCAAGCGCCTCACCGCCGACCA GGCCGCCGCGCGCCGCCACGCCGACGCGCTCAAGTGGCAGCAGGACTCCTTCCACCGCAT CCTCCACCTCTCCGCGCTCCACCGCGAGGGCATCGTCCCCGCCGCCGACGTCCACGCCTT CCGCGCCTCCGTCCTCGCCGCCCTCTCCGCGCCGCCGCAGGGCCCCGCCGACCACCCGCC CATCCTCCGCGACAAGCTCCTCTTCCTCCAGGAGCTGCTCCGCGCCAAGTGCGTCTCGCC GGCCGAGTACAACGCCGCCAAGAGGCCCCTCGTGCAGCGCCTCGCCGAGCT
Homology of Contig U35_29678 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os09g38450.1 | 504 | 2e-51 | protein|expressed protein |
| Brachypodium v1_2 | Bradi4g37640.3 | 371 | 3e-64 | |
| Arabidopsis v10 | None |