barSeed - Barley Seed Development Database

Probe CUST_8808_PI390587928

Source Contig U35_31990

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8808_PI390587928	Hv_44K_v2	ATCCTGGTTGCTGGATCCAGTTCCACCCAATCACGCAGCTCTTTGGCAAGATCAGGGGAG	84	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375510	3651	2e-24	2736 - 2795	100	60 / 60	plus	ABC38833
MLOC	MLOC_70159.1	2948	2e-24	2145 - 2204	100	60 / 60	plus	ABC38833
JLOC1	JLOC1_46546.1	2949	8e-25	1988 - 2047	100	60 / 60	plus
Harvest35	U35_31990	459	3e-25	85 - 144	100	60 / 60	plus

Contig Sequence (459 bp)

>U35_31990 459 Hv_44K_v2
TTCTAGCTCCCAACGGCCGAAAGGCCGAGGTGGAGTCGGCGCTCTTACTTGTCAAGCTCG
GGCTGGCAAGAAAGGCGACCCGACATCCTGGTTGCTGGATCCAGTTCCACCCAATCACGC
AGCTCTTTGGCAAGATCAGGGGAGGCCTGGCGCCGACCACCGCGGCCGCGAACGGGGTGA
TGAGGGCCGGGAATCCCTCGGCGTACTCCGACCACCTGTGGGCTAGTGCATTCCTCGTGT
TTGGCTTCAAGTCGGAGCCGCCGGTCGTTCAGCTCAAGGCGGTGGACATGGTGCTCTTCA
TAAGGAAGACGGCCCTGCCCCTGGCGATCGAGTCCTTCATGGCGTTCTCGCGGTGCGGCT
CGGCCCTGGAGCTGCTCAAGGTGTGCACCAACATCCTGGAGGAGGTGGAGAAGTCCTACA
CGTCGCGGATGCAGGACTGGAAACCGCGCTCGCTGTCGT

Homology of Contig U35_31990 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g38970.1	987	7e-86	protein\|transmembrane receptor, putative, expressed
Brachypodium v1_2	Bradi3g39360.1	993	8e-90
Arabidopsis v10	AT5G56220.1	973	7e-59	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:22754871-22757792 FORWARD LENGTH=973