barSeed - Barley Seed Development Database

Probe CUST_8807_PI390587928

Source Contig U35_31991

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8807_PI390587928	Hv_44K_v2	GCGGTCGCCGAGCCGGCCGGCGCCGCGTCCTGGCTCAAGGACAGCATCCTGCCCTACCTG	362	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75464.3	2445	2e-24	299 - 358	100	60 / 60	plus	ABC12144 ABC12145
MLOC	MLOC_75464.4	1650	2e-24	396 - 455	100	60 / 60	plus	ABC12145
MLOC	MLOC_75464.1	1773	2e-24	492 - 551	100	60 / 60	plus	ABC12144 ABC12145
MLOC	MLOC_75464.2	1976	2e-24	661 - 720	100	60 / 60	plus	ABC12144 ABC12145
JLOC1	JLOC1_50343.1	1877	8e-25	450 - 509	100	60 / 60	plus
Harvest35	U35_31991	422	3e-25	363 - 422	100	60 / 60	plus

Contig Sequence (422 bp)

>U35_31991 422 Hv_44K_v2
ATACCCAACTCCAATCACTCTCCCCCGGCCCAAAACCTTCGCCCGTGCAAATCTCACCTC
GCCCTCCCTCCCTCCGCCCCGCTCCGCTCCTACCTCCAATAATGCCGCTCCGCGACGGCC
TCCGGCGGCGGCTCCAGCGCGCAGGCTGCATCCATCTCGCCGCGCCGGCGCCGGTGTCGC
TGCTGGGCATCAACTACGGCCGCGTGGGGAACAACCTGCCGCCGCCGCAGGCCGCGCTGC
CCCTGCTCCAGGGCCTCGGCATTGCGCGCGTGCGGCTCTACGACCCCGAGCCTGGCGTGC
TGCGCGCCTTCGCCTGGACCGGGATCGAGCTCTACGTCGGCGTGCCCGACCAGTGCCTCG
CCGCGGTCGCCGAGCCGGCCGGCGCCGCGTCCTGGCTCAAGGACAGCATCCTGCCCTACC
TG

Homology of Contig U35_31991 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None