- Probe CUST_8806_PI390587928
- Source Contig U35_31992
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8806_PI390587928 | Hv_44K_v2 | TCAGCTGAAGTCCTGGGAAAAGGAAGTTACAGTACGACCTACAAAGCTGTTCTTGAGGAT | 408 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.716 | 1.420 | 4.413 | 1.849 | 1.017 | 0.836 |
| Raw | 4.448 | 16.078 | 45.221 | 28.103 | 4.673 | 3.285 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_55931.2 | 3985 | 7e-23 | 1201 - 1260 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_55931.3 | 2354 | 7e-23 | 1092 - 1151 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_55931.1 | 2750 | 7e-23 | 1217 - 1276 | 98 | 59 / 60 | minus | None |
| JLOC1 | JLOC1_36119.1 | 2422 | 4e-23 | 1144 - 1203 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_31992 | 497 | 3e-25 | 409 - 468 | 100 | 60 / 60 | plus |
Contig Sequence (497 bp)
>U35_31992 497 Hv_44K_v2 TTTCCAGCCAGTTCTTTCTTGGGGAATGCTTTTCTGTGTGGGTTTCCCCTGGAATCATGT CCAGGAACCGCTCCTTCTCCTTCTCCTAATGCACCACCTTCCCAGGAAAGCAATTTGGAA AAGTTTTGGAGAAAGCATCACAAAATTATCATAATTGCAATACTTGCTGGAGGAGCGGCA ATATTGTTGATTTTGATTATCATACTCGTGACATGCATCTGCAAGAGGAAGGGAGGCGGA GAGCCTGGCGCAGCTTCATCATCATCCAAAGGAAAGGGTGTTGCAGGTGGAAGAGCAGAA AAATCCAAGCCAGAATACAGCAGTGGTGTCCAAGAAGCAGAGAGGAACAAACTAGTTTTC TTTGAGGGCTGTTCATATAATTTCGACCTGGAGGATCTGTTGAGGGCTTCAGCTGAAGTC CTGGGAAAAGGAAGTTACAGTACGACCTACAAAGCTGTTCTTGAGGATGGCACGACGGTG GTGGTCAAGAGGCTAAG
Homology of Contig U35_31992 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |