barSeed - Barley Seed Development Database

Probe CUST_8802_PI390587928

Source Contig U35_43970

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8802_PI390587928	Hv_44K_v2	CGCCGGCGACGAGTTCTCCGCTTCCAGCCTCGCGCCTACCGCCGCCGCGGCTACTGGGGA	247	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356172	2146	2e-24	801 - 860	100	60 / 60	plus	ABC09079
MLOC	MLOC_20994.3	1771	2e-24	305 - 364	100	60 / 60	plus	ABC09079
MLOC	MLOC_20994.4	1928	2e-24	305 - 364	100	60 / 60	plus	ABC09079
MLOC	MLOC_20994.1	3355	2e-24	309 - 368	100	60 / 60	plus	ABC09079
MLOC	MLOC_20994.5	2577	2e-24	298 - 357	100	60 / 60	plus	ABC09079
JLOC1	JLOC1_14560.3	1859	8e-25	305 - 364	100	60 / 60	plus
JLOC1	JLOC1_14560.2	1855	8e-25	305 - 364	100	60 / 60	plus
JLOC1	JLOC1_14560.1	2017	8e-25	305 - 364	100	60 / 60	plus
Harvest21	ABC41329	367	3e-25	248 - 307	100	60 / 60	plus
Harvest35	U35_43970	367	3e-25	248 - 307	100	60 / 60	plus

Contig Sequence (367 bp)

>U35_43970 367 Hv_44K_v2
AGTACCCCGAGGTCTACCTCGCGCTCGATCTCGTCCTCCACGGCGTCGGCTCCGTCCGCC
TCTCCCAGATCCTCGCCACCATCCATGGCGACAACCTCGCCCGCATGGTCAACTCCTCAC
CCGAAGCCGAGGCCCGCGCCCGCGGCGCCGACTCCTGGCCCGTCGTCGAGCACCTCGCGC
AGGACCGCCATGCCGCCCGCGACGCCTTCACCGGCGCCTCCTTCGAGCTCCCCCAGGAGA
CCCTCGCCGCCGGCGACGAGTTCTCCGCTTCCAGCCTCGCGCCTACCGCCGCCGCGGCTA
CTGGGGACGAGGCGCCGCCTGAGGAGGCGCCCCCCATTGAGAAGGACCCCTTTGCGGCCA
GCGACAT

Homology of Contig U35_43970 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g14620.1	642	4e-54	protein\|expressed protein
Brachypodium v1_2	Bradi3g18920.1	634	7e-57
Arabidopsis v10	None