barSeed - Barley Seed Development Database

Probe CUST_87_PI390587928

Source Contig U35_48882

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_87_PI390587928	Hv_44K_v2	AATGTTCATCTAGCAAGCAATGGACACCCCTCAATAATGAGGCCAAATTCAAGGTGCAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55250.7	1172	2e-23	869 - 926	100	58 / 58	plus	ABC19619
JLOC1	JLOC1_35627.5	1885	1e-23	1628 - 1685	100	58 / 58	plus
JLOC1	JLOC1_35627.4	1890	1e-23	1633 - 1690	100	58 / 58	plus
JLOC1	JLOC1_35627.2	1969	1e-23	1712 - 1769	100	58 / 58	plus
JLOC1	JLOC1_35627.1	1832	1e-23	1575 - 1632	100	58 / 58	plus
Harvest35	U35_48882	485	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (485 bp)

>U35_48882 485 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCACCTTGAATTTGGCCTCATTATTGAGGGGTGTCCATTGCTT
GCTAGATGAACATTACATAACTTCATTATTGACAAATGAAGGCTTGCACATGTACAATAA
CATGTCAAATGTCTCAGGCAGACACGCAATGCACCTTGAATTTGGCCTCAGTTAAGTCCT
CGACTGAAAGAGCCGAATGCAACCCGGTAATGCTTAATTTTGCAAGCATGGTGATGTGAA
AGAAAAATCTCACAAGTTACAACACGGATCATACACACATCACAGATCCTGCGTGTACTC
ACCACAGCCCAGAGGCCACAACATTCCACAGGCACAATGGCGCTGCAACCTCTGTTACAG
TATGTGTTACTTGTATCACACCACCAGCCATCTTTACTGTTGCATGGTGGCTGGTGGTGC
CGGGCTCCCTCTACTTGCTTAGAGATGAAGCCCGAGAAAGCGACTTCGGAGAAACTGGCA
CAATC

Homology of Contig U35_48882 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None