barSeed - Barley Seed Development Database

Probe CUST_8795_PI390587928

Source Contig U35_29682

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8795_PI390587928	Hv_44K_v2	AAGAAGCAAATGAGGACCTTTGCGCTTCGAAGCCTCGCGAAAACACAAAGGAAACAACAA	339	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.053	2.124	1.149	0.640	0.301	0.296
Raw	445.170	701.307	334.935	309.500	48.352	51.873

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77212.1	1614	7e-23	134 - 193	98	59 / 60	minus	None
MLOC	MLOC_77212.2	1411	7e-23	97 - 156	98	59 / 60	minus	None
MLOC	MLOC_77212.3	1718	7e-23	446 - 505	98	59 / 60	minus	None
JLOC1	JLOC1_51499.6	1667	4e-23	1256 - 1315	98	59 / 60	plus
JLOC1	JLOC1_51499.5	1615	4e-23	1204 - 1263	98	59 / 60	plus
JLOC1	JLOC1_51499.2	1413	4e-23	1256 - 1315	98	59 / 60	plus
JLOC1	JLOC1_51499.1	1398	4e-23	1241 - 1300	98	59 / 60	plus
Harvest21	ABC29088	409	3e-25	340 - 399	100	60 / 60	plus
Harvest35	U35_29682	409	3e-25	340 - 399	100	60 / 60	plus

Contig Sequence (409 bp)

>U35_29682 409 Hv_44K_v2
GCAGCAATACAGAAGTGGAGAGTATTCACCATGATGTCGATATAAAAGAAATGAAGCATC
ATGATTATCCAAGTTCCTCTCAGGAAGCAAACTCAGACACGGGTGACAATCGGCCTTCCA
TAGAGCTGCAGGGGATGGGTGCTGCTCAGCAGAATCCTGATGAACTGGTGCATGAGCTAG
AAAGATGCGAGCCCATGCTAAAGGAGGCTGCTGCAGAACACGCACATGGCCGACAGGTAC
CGGATGAAGGACTTCCCCAGACAAAGGCTTCAATAGCTCCAACCAAGGGCTGCCAGGCAG
AAGGAACCGCGGATGATAAAAAAGAGAACCTTGGCATGGAAGAAGCAAATGAGGACCTTT
GCGCTTCGAAGCCTCGCGAAAACACAAAGGAAACAACAAGGAGGAGGCT

Homology of Contig U35_29682 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None