- Probe CUST_8786_PI390587928
- Source Contig U35_43980
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8786_PI390587928 | Hv_44K_v2 | ATGGGACTGGGATAGAGTCATTTTCCAAGCTTGGGGACTCGATCTACTTTGAAGAGAAAG | 366 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.133 | 2.090 | 2.063 | 0.919 | 0.240 | 0.188 |
| Raw | 241.722 | 599.980 | 576.627 | 396.977 | 36.782 | 31.878 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK361603 | 2341 | 2e-24 | 1067 - 1126 | 100 | 60 / 60 | plus | ABC18403 |
| MLOC | MLOC_39570.2 | 1700 | 2e-24 | 985 - 1044 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_39570.4 | 1751 | 2e-24 | 999 - 1058 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_39570.1 | 1782 | 2e-24 | 1077 - 1136 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_39570.5 | 1724 | 2e-24 | 1058 - 1117 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_39570.3 | 1710 | 2e-24 | 995 - 1054 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_25809.2 | 1417 | 8e-25 | 703 - 762 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_25809.1 | 1711 | 8e-25 | 997 - 1056 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC41348 | 427 | 3e-25 | 367 - 426 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_43980 | 427 | 3e-25 | 367 - 426 | 100 | 60 / 60 | plus |
Contig Sequence (427 bp)
>U35_43980 427 Hv_44K_v2 TCTACAAGGAAATTGCAACATTCTTCATGAACGTAGTGAACTCTTCCCACAGCTACGCAA CCGGTGGCACGTCCGTCAGTGAATTCTGGTTCGATCCGAAGCGTTTGGCCGAGACTCTGA CCACCGAGAACGAGGAATCCTGCACTACATACAACATGCTAAAGGTATGTCGCCACCTCT TCAGATGGACGAAAGAGATCGCGTACGCGGACTACTACGAGCGCGCGCTGATAAACGGCG TCCTGAGCATCCAGAGAGGGAGGGACCCCGGCGTCATGATCTACATGCTGCCCCAGGGCC CAGGAAGATCGAAGGCACTGAGCTACCATGGCTGGGGAACGCAGTATGATTCGTTCTGGT GCTGCTATGGGACTGGGATAGAGTCATTTTCCAAGCTTGGGGACTCGATCTACTTTGAAG AGAAAGG
Homology of Contig U35_43980 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g41020.1 | 917 | 1e-88 | protein|DUF1680 domain containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g36027.1 | 875 | 2e-91 | |
| Arabidopsis v10 | AT5G12960.1 | 865 | 1e-77 | Putative glycosyl hydrolase of unknown function (DUF1680) | chr5:4097788-4101518 FORWARD LENGTH=865 |