barSeed - Barley Seed Development Database

Probe CUST_8778_PI390587928

Source Contig U35_29694

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8778_PI390587928	Hv_44K_v2	GGATCCCGGGAACAGGAAGGTGCGAGCGGCGCTGAGGGAGGCTGAGCGGAAGGTGTTGGA	325	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_47482.1	2299	2e-24	1144 - 1203	100	60 / 60	minus	ABC07298 ABC23542
JLOC1	JLOC1_30610.1	2322	8e-25	1060 - 1119	100	60 / 60	plus
Harvest21	ABC29110	385	3e-25	326 - 385	100	60 / 60	plus
Harvest35	U35_29694	385	3e-25	326 - 385	100	60 / 60	plus

Contig Sequence (385 bp)

>U35_29694 385 Hv_44K_v2
CCGTCTGGGCGAAGAAGGCGCTCGACCTCGGCCCCGCGGGCCTCATGCTCCCCGCCGTCG
AGTCTCCGGCCGCTGCCGCGGAGGCTGTATCCCACTGCCGCTACCCGCCCCGCGGCGTCC
GTGGCGCTGCCTACCCAATCGTCCGCGCATCCGCCTACGGCCTGGACGACTCCTACCTCT
CCCGCTGCGAGGACGACACCCTCATCATCTGCCAGGTCGAGACCGCGGCCGGCGTTGCGG
AGATCGACGCCATCGCCGCCGTCGAAGGGGTCGACGTCGTCCAGATGGGCCCGCTCGACC
TGTCGGCGAGCATGGGGTACCTGTGGGATCCCGGGAACAGGAAGGTGCGAGCGGCGCTGA
GGGAGGCTGAGCGGAAGGTGTTGGA

Homology of Contig U35_29694 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36030.1	349	8e-57	protein\|4-hydroxy-2-oxovalerate aldolase, putative, expressed
Brachypodium v1_2	Bradi4g35820.1	343	7e-60
Arabidopsis v10	None