barSeed - Barley Seed Development Database

Probe CUST_8754_PI390587928

Source Contig U35_9268

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8754_PI390587928	Hv_44K_v2	GTTTGTCTGTGTGCCGCAATCTCTAGAATTCTCCCCAGTATAATTCTTACGCCCAACTTG	996	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.575	2.363	1.418	0.673	0.461	0.450
Raw	24.158	57.190	29.526	22.466	2.863	4.141

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358415	2500	7e-23	2297 - 2356	98	59 / 60	plus	ABC21322
MLOC	MLOC_28211.2	1745	7e-23	646 - 705	98	59 / 60	minus	ABC19202 ABC21322
MLOC	MLOC_28211.1	1851	7e-23	658 - 717	98	59 / 60	minus	ABC19202 ABC21322
JLOC1	JLOC1_18958.2	1880	4e-23	1166 - 1225	98	59 / 60	plus
JLOC1	JLOC1_18958.1	1729	4e-23	1015 - 1074	98	59 / 60	plus
Harvest21	ABC21322	1056	3e-25	997 - 1056	100	60 / 60	plus	ABC21322
Harvest35	U35_9268	1056	3e-25	997 - 1056	100	60 / 60	plus

Contig Sequence (1056 bp)

>U35_9268 1056 Hv_44K_v2
GAAGGAATTGAACCAAATCTTGTTATGTTGAATTTGTTAATCAATGCTTTTAGTACGGCC
GGAAGGCACTTGGAGGCTCAAGCTGTATTCCAGCATATCAAGGACAGTGGTATGAGCCCA
GATGTTGTGACTTACACTACTCTAATGAAGGCTTTCATGAGAGTAAAAAGATATGAGAAG
GTTTCAGAAGTATATAGTGAAATGGAGCGTGCTGGTTGTACCCCGGATAGAAAAGCTAGG
GAAATGTTGCATGACGCATCTGTTACAATGGAACAAATGGGATGTTATTGAAATTGGAAC
TCCAGCAGCTCTGAAGTGGCTCCTCTGTTAATGTCTATAACTACAAAAGCCCCTACTTTG
CTAGCACATGCTTGAGGATCTCTTGTAAAAGTAAAATAACATGAGACAACAGTTACTTGG
CACACAGAAAGTTCTAGTCCACGTGCTGTGTTTGGTGGAGACCGAAAGAATCTCCTCTGG
CATTTTCTCCACTGGAGATCATCTGTTGTGGAATAAGAATGGGGCCAGCAAGCACAAGAT
TCAGAACGACTGTGATTGCTCCTCAGTTTTAGGTAGATTGGAGTTCTGAGGTCGGGCATA
AGTTCATATCATTCGGCGCCTGCATATTTTTGGCTCGGCGATGCAGTTCAGATTTCATAG
TCAAGGAAACAGTTAAAGGAGACTTCCGGGGATCTGGACAAGGAAAAAGATGGTCAAGTG
TATCATAAGTTTGGAATTCCATTCATTGCCCTCTTCCTGAACCACACTGCATCGTGGTGG
TTTTCAGAATATTAGGTGTACTGAGCATTGACTTGTATGCATATCAGGATAGCTTATGAA
AACAATCATCTTCTGAAGTAGACAACTTAGATGATTCTCTCTAACCATTTTCATACAGCT
ACTTTTTTTTGTCTTCACTTTACATTCCCTCTGCTTCGGCCCGACTGTAAACTCAACATA
GGATCAAATAATTAGGTTAAGTGTCACTGTCCCTGCGTTTGTCTGTGTGCCGCAATCTCT
AGAATTCTCCCCAGTATAATTCTTACGCCCAACTTG

Homology of Contig U35_9268 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g34857.1	508	3e-51
Arabidopsis v10	None