barSeed - Barley Seed Development Database

Probe CUST_8747_PI390587928

Source Contig U35_9276

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8747_PI390587928	Hv_44K_v2	AGGTTGACACAATGATGTTGACTGATGCACCTCTTCTCTATACTCCTGGACAGTTGGCTT	848	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.123	1.055	1.077	0.975	0.569	0.696
Raw	196.244	283.503	257.072	371.262	74.980	100.257

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249159.1	1692	2e-24	858 - 917	100	60 / 60	plus	ABC40315 ABC48372
MLOC	MLOC_19100.1	2649	2e-24	839 - 898	100	60 / 60	minus	ABC40315 ABC48372
MLOC	MLOC_19100.3	1111	2e-24	141 - 200	100	60 / 60	minus	ABC40315
MLOC	MLOC_19100.2	1816	2e-24	839 - 898	100	60 / 60	minus	ABC40315 ABC48372
JLOC1	JLOC1_13245.4	1787	8e-25	924 - 983	100	60 / 60	plus
JLOC1	JLOC1_13245.3	1739	8e-25	924 - 983	100	60 / 60	plus
JLOC1	JLOC1_13245.2	2595	8e-25	1732 - 1791	100	60 / 60	plus
JLOC1	JLOC1_13245.1	2535	8e-25	1720 - 1779	100	60 / 60	plus
Harvest21	ABC19662	926	3e-25	849 - 908	100	60 / 60	plus
Harvest35	U35_9276	926	3e-25	849 - 908	100	60 / 60	plus

Contig Sequence (926 bp)

>U35_9276 926 Hv_44K_v2
CACCAGGCCACCCGAAACCCCTTGACGGCCGGACCGCCGCTGCCGCCCGTCGCCGCGCCC
CTCCTCGGAGTCCACCGGAGGACGCCATAGTATTGCGGCATACCCTCCGCACCCGCATCC
GTCAGGCAGCGGGCATCTCACTCGCGGTGTTCACCAGCAGGGGGGAGAGGGACTCGATTC
GGCCGCCGGCAGCGGAGGGAGGGGCGTCAAGATGTCGGATTTCCAGACCTCCACCCACCG
GGAGCGGTGGATCTTCCAAACGCAGGACCTGGTGGATAAGTGGACGACGGCCAACCGGCG
TTCCGCGGAGATACTCGCCCAGTATGGGACGACGAGATTGAAGGTGGACCCTGTTGATGG
CTCGATATCGAACCCAGAACCTGTGCCTGATGGTACAGTTGTTGGGAGCTCGAGTGTGAA
GCCTCTATCCTGCGAAGAGGAGCAAGTGATGCGGATATTTTATGAGCAAAAGATTCAGGA
AGTGTGCAGAGCATTCAAATTCCCCCACAAAATTCAGGCTACAGCCATAATATATTTCAA
AAGATTCTATCTACAGTGGTCTGTAATGGAGCACCACCCAAAGCATATTATGTTAACTTG
TGTATATGCTTCTTGCAAAGTGGAAGAAAATCATGTTTCTGCTGAGGAACTTGGCAAAGG
GATTCAGCAGGACCACCAGATTATTCTAAATAATGAGATGATTGTTCTGAAATCTTTAGA
TTTTGATTTGATCGTTTATGCTCCATATCGTTCTATCGAAGGATTTATTGATGACATGGA
TGATTTTTGTAGGGCAGGTAATGGTGCACACCAACGGTTGAAGGATTTGCATCAAACTGC
GAATTCTGAGGTTGACACAATGATGTTGACTGATGCACCTCTTCTCTATACTCCTGGACA
GTTGGCTTTGGCTGCTCTGTACAAGT

Homology of Contig U35_9276 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g52750.2	331	3e-149	protein\|cyclin, putative, expressed
Brachypodium v1_2	Bradi1g09370.1	329	4e-154
Arabidopsis v10	AT5G27620.1	336	2e-97	\| Symbols: CYCH;1 \| cyclin H;1 \| chr5:9771762-9774684 FORWARD LENGTH=336