- Probe CUST_8746_PI390587928
- Source Contig U35_9277
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8746_PI390587928 | Hv_44K_v2 | CAACATCTATCGATTTGTCACTTGCAAAAGTGTTGAAGAGGATATATTGGAGCGGGCAAA | 631 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.456 | 1.313 | 1.059 | 0.741 | 0.486 | 0.374 |
| Raw | 419.274 | 564.337 | 418.180 | 423.415 | 105.032 | 89.534 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK363877 | 6637 | 2e-24 | 3603 - 3662 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_58909.1 | 3323 | 2e-24 | 486 - 545 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_58909.4 | 3011 | 2e-24 | 444 - 503 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_58909.5 | 1845 | 2e-24 | 37 - 96 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_58909.3 | 2325 | 2e-24 | 444 - 503 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_58909.2 | 3190 | 2e-24 | 481 - 540 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_38299.3 | 2937 | 8e-25 | 425 - 484 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38299.2 | 3329 | 8e-25 | 425 - 484 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38299.1 | 3066 | 8e-25 | 436 - 495 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_9277 | 722 | 3e-25 | 632 - 691 | 100 | 60 / 60 | plus |
Contig Sequence (722 bp)
>U35_9277 722 Hv_44K_v2 GAGATGTCGAGAAGTCTTTACCTCCAAAAATTGAGCGAATTCTTCGTATCGAAATGTCTC CTCTACAGAAACAATATTACAAGTGGATTCTAGAGCGAAATTTTCAGAATCTGAATAAAG GAGTTCGCGGGAATCAGGTCTCACTTTTGAATGTTGTCGTTGAGTTAAAGAAGTGTTGCA ACCATCCATTCTTGTTTGAAAGTGCTGATCATGGTTATGGTGGAGATAGCATTGGTGATC GCAATAAAGTTGAACGCATTGTTATGAGTAGTGGGAAGTTGGTTTTGTTGGACAAGCTAC TGTTGAGACTGCGGGAGACTAACCACCGTGTGCTTATATTCTCCCAGATGGTGAGGATGC TGGACATCCTTTCTGAGTACCTATCCCTTCGAGGCTTCCAGTTTCAGAGGCTTGATGGCA GTACAAGAGCGGATCTTCGTCACCAGGCCATGGAACATTTTAATGCTCCTGGAAGCGATG ATTTTTGTTTCCTTCTGTCTACACGTGCTGGTGGACTTGGGATTAATCTTGCAACAGCGG ATACGGTGATAATTTTTGATTCAGATTGGAATCCTCAAAATGATCTACAGGCAATGAGTA GGGCACATAGGATTGGGCAACAAGATACTGTCAACATCTATCGATTTGTCACTTGCAAAA GTGTTGAAGAGGATATATTGGAGCGGGCAAAAAAAAAAATCAAAAGAATANACCGACCTT GT
Homology of Contig U35_9277 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g46590.1 | 1003 | 3e-142 | protein|SNF2 family N-terminal domain containing protein, expressed |
| Brachypodium v1_2 | Bradi1g18910.1 | 1735 | 3e-139 | |
| Arabidopsis v10 | AT2G13370.1 | 1724 | 3e-124 | | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544601-5555543 REVERSE LENGTH=1724 |