barSeed - Barley Seed Development Database

Probe CUST_8745_PI390587928

Source Contig U35_9278

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8745_PI390587928	Hv_44K_v2	TTTTGGAAAGGTTCAGCACAAAATGAACCATGTCCGTAACTTCAGCACAATCTAACCCCT	337	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76091.3	1871	2e-24	1487 - 1546	100	60 / 60	plus	ABC12150 ABC20649 ABC24171 ABC36731
MLOC	MLOC_76090.1	3597	2e-24	1523 - 1582	100	60 / 60	plus	ABC12150 ABC20649 ABC24171 ABC36731
MLOC	MLOC_76090.2	3526	2e-24	1452 - 1511	100	60 / 60	plus	ABC12150 ABC20649 ABC24171 ABC36731
JLOC1	JLOC1_50751.1	5806	8e-25	1466 - 1525	100	60 / 60	plus
Harvest21	ABC20649	750	3e-25	354 - 413	100	60 / 60	minus	ABC20649
Harvest35	U35_9278	750	3e-25	338 - 397	100	60 / 60	plus

Contig Sequence (750 bp)

>U35_9278 750 Hv_44K_v2
CGGTATGGATCCTCCTCACCTCTCTCTCTCCCTAAAACAAATCAGTCAAGCTGTCATTGC
CGACTCACTTACCCATCATCCATATGGCTGCCGTGTTAGTTCCCTGACGCTACGGTGCTG
CCAGCCACTGCCATTCGATGCCTTTGATTTGGTTGTGGCGTGGGCTGGGAACCTCATAGT
GTTGTCTGATGCGTTATCCAAGCCTGAGGTTTGGTTGGCTGATGCCAGGTATGAGCAGCT
CCTGACTCCTGAGAGCATGGTTAATAGTATAGCCAACTGCTGGCATGCGTGTATGGATAT
TATGGTCATGTTGCTGCCGAAGTTACTGTTTTGACCTTTTTGGAAAGGTTCAGCACAAAA
TGAACCATGTCCGTAACTTCAGCACAATCTAACCCCTTCTATCCATCCATCCATCCATCT
ACTATCCATCTCGGGCAATGATGATGAAACATGGCTGACATAAACTTGTCTTCGATTATT
CGAGGAGCTGTGAGCATCAAAAACCCACTCTCCCCTCTTTTGGAACCTTCTATCGTTCTC
ACCGAATATTGACGGCTCTGTCTTGGATGGTCATTCTGCTGAGTGATAACCAGAGGAGCT
CGACCTGGTGGGGGTTGATCTGGTGATAGAAGATGGTGGAGCAAGGGTTGTATGATGTAT
CAAAGGCGAATCTGAGCCCTCAAGCAGTACTCAGAAAAAAACAAAAAAATAAACCAAAAA
AAAAAAAAAAAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_9278 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None