barSeed - Barley Seed Development Database

Probe CUST_8743_PI390587928

Source Contig U35_9280

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8743_PI390587928	Hv_44K_v2	CTAACATCTCCCGTGCTTCTGGAGGAGATACTCAAAGGCAATCTCAATGCCTGAATATCT	578	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51011.2	2334	9e-22	1152 - 1213	97	60 / 62	plus	ABC21042
MLOC	MLOC_51011.1	1664	9e-22	475 - 536	97	60 / 62	plus	ABC21042
JLOC1	JLOC1_32551.1	1636	5e-22	475 - 536	97	60 / 62	plus
Harvest35	U35_9280	689	3e-25	579 - 638	100	60 / 60	plus

Contig Sequence (689 bp)

>U35_9280 689 Hv_44K_v2
TTGAGAAACCCTAGCGATGCTCCAGATACGCCTGAGCAAGATCGGCTCGTCGGACTCCGG
CGCCGCCGCCTCTGGCGCGGCGGCTGGGGCGTCCGGCGGCGCCCCGGCGAAGTCCGCTGC
CGCGGCATCTGGTGGCGCCCCGGAATCGGTGACTGTGGCTTGCCCCGACCACCTGATCAT
CGCGGACCTCGCCGTGGCGAAGAGCCTCGGCGCCGTAACAAACTCCGCCATCGCCGCGAC
GCGCGCCATTGGCCGCCGCTCCCGCCGGCCCCTCGGCGAGCGCGTCCACATCTGCTCCCG
CTGCGAGTTCCCCATCGCCATTTACGGCCGCCTCATTCCTTGCGAACATGCTTTCTGTTT
AGCCTGTGCAAGAAGTGATTCCAGCTGCTATCTTTGTGATGAGCGCATTCAGAAGATTCA
GACTGTGAAAATGATGGAAGGGATTTTTATCTGCGCTGCACCTATGTGCCTCAAGTCTTT
CCTTAAGAAAGCTGAATTTATGTCTCATGTACCTGAAGCTCATGCAAATCTCCTCCAAAG
TAACACGGAGAAAGAAGAACGTAATGAACCAGATGCTCCTAACATCTCCCGTGCTTCTGG
AGGAGATACTCAAAGGCAATCTCAATGCCTGAATATCTACTGCACGTGCTCCTCCAGGCC
GGGTGTTTCACCACTTCAGTTCTACATGC

Homology of Contig U35_9280 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g35190.1	503	3e-98	protein\|ZOS10-06 - C2H2 zinc finger protein, expressed
Brachypodium v1_2	Bradi3g29854.1	467	1e-106
Arabidopsis v10	AT5G01160.1	360	2e-69	RING/U-box superfamily protein \| chr5:54280-55727 FORWARD LENGTH=360