barSeed - Barley Seed Development Database

Probe CUST_8736_PI390587928

Source Contig U35_9287

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8736_PI390587928	Hv_44K_v2	TTCTTCATCAATCCTGCCACCAGTCAGCCAAATGTTTCTGGGCTCATTTTAGCTGGTTCT	725	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.109	0.960	1.230	0.835	0.335	0.298
Raw	23.433	29.811	34.507	39.110	2.874	3.381

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248936.1	1959	2e-24	771 - 830	100	60 / 60	plus	ABC15314
MLOC	MLOC_12664.1	2025	2e-24	872 - 931	100	60 / 60	plus	ABC15314
JLOC1	JLOC1_8502.1	1887	8e-25	676 - 735	100	60 / 60	plus
Harvest21	ABC20897	1048	3e-25	726 - 785	100	60 / 60	plus
Harvest35	U35_9287	1048	3e-25	726 - 785	100	60 / 60	plus

Contig Sequence (1048 bp)

>U35_9287 1048 Hv_44K_v2
CGCCGCCCAGATTCTTCCGCCCAAACCCTAGCGCCGCCCCACCTGCCGCCGGGCGCCGAC
CGAGGTGAAGGCAGAGGTGTGGGAACACAACCAAGATGGCTGACGGTCATGATAATGACA
AAAACATTGAGATCTGGAAAGTTAAGAAGCTGATTAAAGGACTTGATGCTGCCCGTGGAA
ATGGGACAAGCATGATATCGCTGATCATGCCGCCTCGTGATCAGGTCTCACGAGTAACCA
AAATGTTGGGTGATGAGTATGGAACTGCCTCAAACATCAAGAGCAGGGTCAACAGGCAGT
CTGTCTTGGCCGCTATTACCTCTGCTCAGCAAAGGTTGAAGCTGTACAATCGTGTTCCCC
CCAATGGATTGGTGCTTTATACTGGAACCATCGTGACTGATGAGGGTAAAGAAAAGAAAG
TCACCTTTGACTTCGAGCCATTCAGACCAATTAATGCTTCCCTGTATCTCTGTGACAACA
AGTTCCACACTGAGGCACTGAATGAGCTGCTTGAGTCTGATGATAAGTTTGGCTTCATTG
TCATGGATGGTAATGGAACACTTTTTGGAACACTGAGTGGCAACACTAGAGAGGTTCTTC
ACAAGTTCTCTGTTGATCTCCCAAAGAAGCATGGCAGAGGAGGCCAGTCAGCACTTCGCT
TTGCCCGCCTGCGCATGGAGAAACGCCACAACTATGTGCGCAAGACAGCCGAGCTCGCGA
CACAATTCTTCATCAATCCTGCCACCAGTCAGCCAAATGTTTCTGGGCTCATTTTAGCTG
GTTCTGCTGACTTCAAGACTGAGTTGAGTCAATCTGACATGTTTGATCAGCGCTTGGCAA
CCAAGATACTCAAGGTGGTTGATGTTTCCTATGGTGGAGAGAATGGCTTCAACCAGGCCA
TTGAGATATCTGCTGAAGTCCTTTCCAATGTCAAGTTCATCCAAGAAAAGAAGCTCATCG
GAAAGTACTTTGAGGAGATAAGCCAAGACACTGGCAAGTATGTTTTTGGTGTGGATGACA
CCATGGCTGCCCTTGAAATGGGTGCAGT

Homology of Contig U35_9287 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g71270.1	437	protein\|eukaryotic peptide chain release factor subunit 1-1, putative, expressed
Brachypodium v1_2	Bradi2g60380.1	437
Arabidopsis v10	AT5G47880.1	436	\| Symbols: ERF1-1 \| eukaryotic release factor 1-1 \| chr5:19386555-19387865 REVERSE LENGTH=436