barSeed - Barley Seed Development Database

Probe CUST_8734_PI390587928

Source Contig U35_9289

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8734_PI390587928	Hv_44K_v2	TGTTGCACGGGCAATGACACCTATTATTGAGAAGTCCTTGACCTCTATAGTTGCTGATTC	844	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.620	1.253	1.648	1.187	0.573	0.480
Raw	144.756	146.720	201.745	217.461	39.618	35.706

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367694	4415	2e-24	3192 - 3251	100	60 / 60	plus	ABC12241
MLOC	MLOC_55628.2	3948	2e-24	1187 - 1246	100	60 / 60	minus	ABC12241
MLOC	MLOC_55628.1	4470	2e-24	1704 - 1763	100	60 / 60	minus	ABC12241
JLOC1	JLOC1_35910.1	4049	8e-25	2596 - 2655	100	60 / 60	plus
Harvest21	ABC20177	902	4e-24	845 - 902	100	58 / 58	plus
Harvest35	U35_9289	904	3e-25	845 - 904	100	60 / 60	plus

Contig Sequence (904 bp)

>U35_9289 904 Hv_44K_v2
GATCAGGCGCTCTGTCTGCTGAAAGCAATCAAATCTCTAAATCTGATGGCGCAAAAATCC
AGGATGACTCTATTAGTAGCCCTCGGATTGCAGAAGTGGAAGCAAAACATGTTGATGAGA
TTAAATCTGATTTGGAGCTTGAAGCTGTCAAGGAAGCTCAAGTTGTCCATGAGAACTCAG
AGAAAGCTCAAAATTCGTTGGAGCAAACTGTTGAAATGATCAGTGAGCGTTCAGTGACAA
CTGATAAGTATAGCGTGGAAGAATCACGGTCACCATCTGGTAGACTGGTCCCTGACCATA
CTGGTGCTGCTGGAGAAAATGTTCAAAACAAAACCGTGGAAAAACCTGGCACAAGTGATT
ACTCCTCTTCCTCTGTGTCTAAGGAGCAATCATCTTCATATACCAAGGAAAATGTTTTTC
ATCCTCAAGCATCTGGTCAGTCCTCACCTTCTACAAGTGCATTTAACTCAACTGAGTCTT
CGCATGAACCTGTCAGCAGTGCATACCCTCCTATTGAATCCTCTTCAGAAGTTGCTGATA
TGCTGCAACAGCTAATAGCCATGCAGAAGGATATGCACAAGCAGCTAGGTACTATCGTTA
GTGCTCCCATTGCGAAGGAAGGTAAAAGAATTGAAACATCACTAGGCCGTACCATGGAGA
AATCTATTAAGGCTAGCATTGATGCCTTGTGGGCTCGTTTCCTGGAGGAGAACACGAAAC
GTGAGAAGGCCGAAAGGGAACGAATGCAGCAAATGACCACTCTCATCACAAACTCAATAA
GCAAGGACCTTCCTGCTATGTTGGATAAGTTAGTAAAGAGAGAAGTTTCTTCACTTGGAC
CAATTGTTGCACGGGCAATGACACCTATTATTGAGAAGTCCTTGACCTCTATAGTTGCTG
ATTC

Homology of Contig U35_9289 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g49090.2	1118	5e-111	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi3g56517.1	1375	7e-143
Arabidopsis v10	None