barSeed - Barley Seed Development Database

Probe CUST_872_PI390587928

Source Contig U35_46814

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_872_PI390587928	Hv_44K_v2	TCAATACCACCAGGGTTTTCTAGCATGACAAGCCTTGATACAGTCGATTTCTCTTACAAT	447	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69628.2	4202	2e-24	2141 - 2200	100	60 / 60	plus	ABC16556
MLOC	MLOC_69628.1	4855	2e-24	2580 - 2639	100	60 / 60	plus	ABC16556
JLOC1	JLOC1_46154.4	4685	8e-25	1978 - 2037	100	60 / 60	minus
JLOC1	JLOC1_46154.3	4668	8e-25	1961 - 2020	100	60 / 60	minus
JLOC1	JLOC1_46153.1	4900	8e-25	2649 - 2708	100	60 / 60	plus
JLOC1	JLOC1_46154.2	5170	8e-25	2463 - 2522	100	60 / 60	minus
JLOC1	JLOC1_46154.1	4291	8e-25	1584 - 1643	100	60 / 60	minus
Harvest21	ABC47388	507	3e-25	448 - 507	100	60 / 60	plus
Harvest35	U35_46814	507	3e-25	448 - 507	100	60 / 60	plus

Contig Sequence (507 bp)

>U35_46814 507 Hv_44K_v2
GGTTTATCGGGTGGCATTCCAGCAGTGTTTGGGAGCATGGCAAGCGGACGGGACCTCAGC
TTGGCTGACAATAATCTCACAGGAAGTGTTCCACCTGAGCTGGGCCAGCTCAGCCTCTTG
TTCAGTCTCAATCTTAGCCATAATGCCCTCTCGGGGTCAATTCCCGCAAATTTGGGCAAC
AATTCCAAGTTACAGGAAGTCGATTTGTCTGGGAACTCGCTTACCGGGACAATCCCGGTG
GGCATAGGCAAGCTCCGTTATCTATTATCTCTTGATATGAGCAAGAACAAGTTGTCAGGG
CAGATACCAAGTGAGCTCGGCAATCTGGTTGGGCTGCAGATCCTTCTTGATCTGAGCAGT
AACTCATTGTCGGGTACAATCCCCTCGAATCTTGAGATGCTGAGGAATTTGCAGAAGCTG
AACCTGTCACACAACGATCTCAGTGGTTCAATACCACCAGGGTTTTCTAGCATGACAAGC
CTTGATACAGTCGATTTCTCTTACAAT

Homology of Contig U35_46814 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g33040.1	1214	3e-60	protein\|receptor-like protein kinase precursor, putative, expressed
Brachypodium v1_2	Bradi3g28380.1	1213	8e-67
Arabidopsis v10	None