barSeed - Barley Seed Development Database

Probe CUST_8726_PI390587928

Source Contig U35_9298

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8726_PI390587928	Hv_44K_v2	GGTGCTGCTACTGTGTACTCTGCTTAGAACTTTTATGCACCATAATCTGTGTTTAAAAAA	528	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.467	1.445	1.069	0.813	0.370	0.280
Raw	7154.693	10875.940	7194.057	8363.523	1374.211	1125.452

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC20761	599	3e-25	12 - 71	100	60 / 60	minus	ABC20761
Harvest35	U35_9298	599	3e-25	529 - 588	100	60 / 60	plus
Harvest35	U35_35247	875	8e-21	796 - 850	98	54 / 55	plus

Contig Sequence (599 bp)

>U35_9298 599 Hv_44K_v2
GCCCCCGCCACCTGTTGGTCAATACCCTCCCATGCAGATGCATGGACAGCCTGCCTGGCC
TGGTCCTCCGCAGAATATGCAACAAGTACCACCTCCGATGCAACAGCAGCTTCAATACAG
GCTTCCAGGGATGCCCCCGCCGCAAAACATGATGCCTCCGCCACAAAACATGATGCCTCC
GCCACCTCATCACATGTCCAGGCCGCCGCCGCCACCTCCCAATATGCAAGCTCCACCTAT
GTGGAGGCCACCCCCGCCCCCGCAACAAGGTGGTGGAATGCCGCCGCCTCCAATGTCCAT
GCCACCTCCACCACCACCGCCTTCTGGTTAAAAACATGCAAGGGGTCTTCCGTTGGGTTT
AACCTGGCGCGCAGCAAGTGTAGACCAAGGATGTTAAAGTCTTCCATATTTTGCCATGTA
ACTTGCAAGTTGCAACACTAGGAGAGTATCGGAATTGAGAGAATTAGCGGATGGTGATAC
AAAATATGGCATGGCTTTTGTGATTGCATGTACAGTACACCTTGTATGGGTGCTGCTACT
GTGTACTCTGCTTAGAACTTTTATGCACCATAATCTGTGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_9298 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None